Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01403 ATGGGGTTGTTGTGGGTGAGCGAGGAGGAACAGCAGCCTGTGTCTGCCTCACCAACCTACTTCGCTCCATGTGCCAGTGGCGATCGCATCCAGCTACTGTTACAGGTTCGTCTTCTTCTTCGTCTTCTTCTGCATCCTCTTCCAGATCTTTCTTTCAATCCTCACACGCGCCTCTTACTTAGTTCTAGGGTCTTTGTTTCCGCCATAGATGTTTATCAAAGAAGCAAGATGTTCGGTGTAATAAAGCACAAGACTCAGAGCATTCGCCCTGCCTTCTCCGCTATCAGACATTTTTCTTCTGCCGCCAAAGAGATCACTGTTCGAGAGGCTCTCAACACCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGAGAAGTATGGCCCTGAGAGGGTTCTCGATACCCCAATCACTGAGGCTGGGTTTGCTGGTATTGGAGTTGGTGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCCATAGACCATATTATTAATTCTGCCGCAAAATCTAATTACATGTCTGCTGGGCAAATATCTGTACCTATTGTTTTTAGAGGACCCAATGGTGCTGCCGCTGGGGTTGGTGCCCAGCATTCTCAATGTTATGCATCTTGGTATGCTTCATGCCCTGGGTTGAAAGTCCTGTCTCCGTATTCATCTGAAGATGCACGTGGTTTGCTTAAAGCTGCTATAAGGGACCCCGATCCTGTTGTTTTTCTTGAAAATGAGTTGCTATATGGTGAGTCATTCCCTGTTTCGGCTGAAGCTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTAACTATTACAGCTTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCTAAAGAAGGAATCAGCGCCGAGGTTATTAATTTGCGTTCAATCCGACCATTGGATCGATCAACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTAGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGGGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGACGCACCTGTTGAGAGAATTGCTGGGGCTGATGTACCTATGCCATACGCAGCTAACCTGGAGAGATTGGCTGTTCCACAGAAATGTCTTTTTATTTTGAATGGGAGTAGTGATAGCCTGGACATGATGGTCTTGTGTGATACGAGTATTGATGCTAATTTGTTCAAGGTTTTGGTACAAGTGTATAGAGAATTTAAATCTGATTGTTTTCTGGTATATGTGGATGGACAGATTGAAGATATTGTTCGAGCTGCGAAGAGAGCATGCCACAGATCGGTGCCTTTGGCTGCAGCTGCTTGA 1467 0.4567 MGLLWVSEEEQQPVSASPTYFAPCASGDRIQLLLQVRLLLRLLLHPLPDLSFNPHTRLLLSSRVFVSAIDVYQRSKMFGVIKHKTQSIRPAFSAIRHFSSAAKEITVREALNTALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQKCLFILNGSSDSLDMMVLCDTSIDANLFKVLVQVYREFKSDCFLVYVDGQIEDIVRAAKRACHRSVPLAAAA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01403 488 CDD TPP_PYR_E1-PDHc-beta_like 109 275 - -
Vimu6g01403 488 SMART Transket_pyr_3 105 280 IPR005475 -
Vimu6g01403 488 Pfam Transketolase, C-terminal domain 298 417 IPR033248 -
Vimu6g01403 488 Gene3D - 297 419 IPR009014 GO:0003824
Vimu6g01403 488 FunFam Pyruvate dehydrogenase E1 beta subunit 297 422 - -
Vimu6g01403 488 FunFam Pyruvate dehydrogenase E1 component subunit beta 104 296 - -
Vimu6g01403 488 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 104 284 IPR029061 -
Vimu6g01403 488 SUPERFAMILY TK C-terminal domain-like 293 415 IPR009014 GO:0003824
Vimu6g01403 488 Gene3D - 104 296 - -
Vimu6g01403 488 Pfam Transketolase, pyrimidine binding domain 104 279 IPR005475 -
Vimu6g01403 488 PANTHER DEHYDROGENASE RELATED 96 479 IPR027110 GO:0004739|GO:0006086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01403 Vimu-Chr6 13562056 13567539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01403 61 416 Acyl Lipid Metabolism Gene Families AT1G30120 40.443 3.10e-89 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01403 K00162 - gmx:100817577 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01403 6 13562056 13567539 Vimu6g01403 6 13562056 13567539 ECH