Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0004 ATGGAGACGAACATGATCACGTTTTTTCATGTTCTAGccatttttcttctcctatcAGACCCTTTTGCTGTTGCAAATGCAAACTCTGAAGGTGATGCTCTGTTCGCGTTCAGAAGAGCTGTGAAAGACCCGAATAACGTCCTACAGAGCTGGGATCCAACTTTGGTGGATCCTTGTACATGGTTTCATGTTACCTGTGATGATGATAAGCGAGTTACCCGACTAGACCTCGGACACGCAAAACTTTCTGGCCATTTGGTTCCAGAGCTGGGGAGGCTCCAGCGCCTTCAGTTTCTAGAATTGTACAAGAATGATTTGATGGGTCCAATACCAAAGGAAGTTGGAGACCTCAAGAACCTGGTTAGCTTGGGTCTCTACCAGAATAACCTCACTGGCTCCATCCCTGCCACCCTGTCCAACCTCTCCAACATCAAATTCTTGCGACTCAACAGCAACAAACTCACTGGAAGAATACCGAGGAAACTCACTAAGTTGGGAAACCTCAAGATCCTAGACCTATCAAACAACGATCTATGTGGTACTTTCCCGACATCAGGCTCCTTCTCCAAGTTCTCCGAAGAAAGTTTCAAGAATAATCCAAGACTTAAAGGACCAGAATTAATGGGATTCGTCAGATATGATACTGGAGGAAGCTGCAAATGA 663 0.4419 METNMITFFHVLAIFLLLSDPFAVANANSEGDALFAFRRAVKDPNNVLQSWDPTLVDPCTWFHVTCDDDKRVTRLDLGHAKLSGHLVPELGRLQRLQFLELYKNDLMGPIPKEVGDLKNLVSLGLYQNNLTGSIPATLSNLSNIKFLRLNSNKLTGRIPRKLTKLGNLKILDLSNNDLCGTFPTSGSFSKFSEESFKNNPRLKGPELMGFVRYDTGGSCK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0004 220 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Ssu3g0004 220 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 10 219 - -
Ssu3g0004 220 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Ssu3g0004 220 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 219 - -
Ssu3g0004 220 SUPERFAMILY L domain-like 29 191 - -
Ssu3g0004 220 Gene3D Ribonuclease Inhibitor 26 209 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0004 Ssu-Chr3 128595 130520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0004 1 205 Receptor kinase-like Gene Family AT1G71830 57.073 3.09e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0004 - - gmx:100778819 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0004 3 128595 130520 Ssu3g0004 3 128595 130520 ECH