Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0871 Acco02g0802 Accr2g02909 . . . . . . Alju01g0804 Amo16g3077 . . . . . . . . Dere01g2060 Dod01g1868 Enph2g0624 Glsi02g0487 . . . . . . . . . . . . Lele05g0635 Lele06g0455 Lele07g0666 Lele08g0468 . . . . Mibi02g0717 . . . . . . . . . . . Sto8g1628 . . . . . . . . .
Pvu1g0872 . . Adu06g02237 Aed9g1093 . Ahy16g2357 Ahy6g2030 Aip06g02648 . Amo16g3081 Amo06g2456 Apr4g1542 . . . . . Cca07g00744 . . . . . Gma16g00434 . . . . . . . . . Lasa3g02285 . . . . Lja1g1682 Mal3g3077 Mepo3g02443 . . Mtr7g2276 . Phco2g00930 . Psa3g2168 . Pumo5g02118 Rops8g02391 . Spst1g00256 Ssu4g1845 . Tpr6g1042 Trre13g02042 Tsu07g02874 Vian2g01571 Vifa5g01877 . . . .
Pvu1g0873 . . . . . . . . . . . . . . . . . . . . . . . . Gso19g0893 . . . . . . . . . . . . . . . . . . . . . . . Pste5g00925 . . . . . . . . . . . . . . .
Pvu1g0874 . . Adu06g02239 Aed9g1094 . Ahy16g2360 . Aip06g02654 . . Amo06g2458 Apr4g1543 Arst6g02902 . . . Car03g01788 Cca07g00745 . Dod01g1866 . . . . . Gso16g0397 . . . . . . Lapu1g00505 Lasa3g02284 . . . . Lja1g1683 Mal3g3076 . . . Mtr7g2275 Phac1g01147 Phco2g00931 . Psa3g2169 . Pumo5g02119 Rops8g02390 Seca2g03374 Spst1g00257 Ssu4g1846 . Tpr6g1041 Trre13g02043 Tsu07g02870 Vian2g01570 Vifa1g06053 . . Vivi6g03297 .
Pvu1g0875 . . . . . . . . . . . . Arst6g02904 . . . . . . . . . . . Gso19g0892 Gso16g0398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0876 . . Adu06g02244 Aed9g1096 . Ahy16g2370 Ahy6g2033 Aip06g02666 . . Amo06g2465 Apr4g1545 Arst6g02914 . . . Car03g01787 Cca07g00749 . Dod01g1864 . . . Gma16g00440 . Gso16g0401 . Lal25g1162 . . . . . Lasa3g02283 . . . . Lja1g1684 Mal3g3075 Mepo3g02442 Mesa25g01743 . Mtr7g2274 Phac1g01148 Phco2g00932 . Psa3g2170 Pste5g00917 Pumo5g02123 Rops8g02389 Seca2g03372 Spst1g00258 Ssu4g1850 . Tpr6g1040 Trre13g02044 Tsu07g02869 Vian2g01467 Vifa5g01873 Vimu6g03687 . Vivi6g03296 .
Pvu1g0877 . . . . . . . . . . Amo06g2466 . . . . . Car03g01786 Cca07g00751 . . . . . . . . . . . . . . . Lasa3g02282 . . . . . Mal3g3074 Mepo3g02441 Mesa25g01744 . Mtr7g2273 Phac1g01149 . . Psa3g2171 . Pumo5g02126 Rops8g02387 Seca2g03371 . . . Tpr6g1039 Trre13g02045 Tsu07g02868 Vian2g01468 Vifa5g01871 Vimu6g03686 . Vivi6g03295 .
Pvu1g0878 . . . . Aev06g1924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0871 Chr1 15076793 15087186 +
Acco Acco02g0802 Chr02 5666265 5680135 -
Accr Accr2g02909 Chr2 64949953 64965501 +
Alju Alju01g0804 Chr01 5948897 5962509 -
Amo Amo16g3077 Chr16 133291780 133299429 +
Dere Dere01g2060 Chr01 34590069 34609712 -
Dod Dod01g1868 Chr01 53429973 53441582 -
Enph Enph2g0624 Chr2 4817819 4832698 -
Glsi Glsi02g0487 Chr02 3115410 3122953 +
Lele Lele05g0635 Chr05 3737856 3738919 -
Lele Lele06g0455 Chr06 2781211 2792966 -
Lele Lele07g0666 Chr07 3799113 3800380 -
Lele Lele08g0468 Chr08 2856161 2870783 -
Mibi Mibi02g0717 Chr02 6876821 6896184 -
Sto Sto8g1628 Chr8 10448038 10463271 +
Pvu Pvu1g0872 Chr1 15095230 15097737 +
Adu Adu06g02237 Chr06 93427845 93442166 +
Aed Aed9g1093 Chr9 8100061 8112701 +
Ahy Ahy16g2357 Chr16 129789187 129799263 +
Ahy Ahy6g2030 Chr6 99017746 99037895 +
Aip Aip06g02648 Chr06 116231032 116241068 +
Amo Amo16g3081 Chr16 133367729 133392032 +
Amo Amo06g2456 Chr06 86759168 86769319 +
Apr Apr4g1542 Chr4 16747935 16763182 +
Cca Cca07g00744 Chr07 11538130 11561485 +
Gma Gma16g00434 Chr16 4632056 4648319 +
Lasa Lasa3g02285 Chr3 541793699 541807872 -
Lja Lja1g1682 Chr1 18544780 18557481 +
Mal Mal3g3077 Chr3 105737598 105748580 -
Mepo Mepo3g02443 Chr3 34422605 34428619 -
Mtr Mtr7g2276 Chr7 39154615 39164456 -
Phco Phco2g00930 Chr2 11598345 11638345 +
Psa Psa3g2168 Chr3 190442778 190452025 +
Pumo Pumo5g02118 Chr5 57714852 57726595 +
Rops Rops8g02391 Chr8 55315759 55334660 -
Spst Spst1g00256 Chr1 3543303 3551009 +
Ssu Ssu4g1845 Chr4 33754546 33767277 +
Tpr Tpr6g1042 Chr6 9738732 9749289 -
Trre Trre13g02042 Chr13 17681098 17689047 +
Tsu Tsu07g02874 Chr07 33897358 33906219 -
Vian Vian2g01571 Chr2 32609858 32623885 -
Vifa Vifa5g01877 Chr5 545342302 545344421 -
Pvu Pvu1g0873 Chr1 15109683 15111628 +
Gso Gso19g0893 Chr19 35146106 35163904 -
Pste Pste5g00925 Chr5 6023399 6059964 -
Pvu Pvu1g0874 Chr1 15118594 15120038 +
Adu Adu06g02239 Chr06 93470984 93491116 +
Aed Aed9g1094 Chr9 8115468 8128142 +
Ahy Ahy16g2360 Chr16 129867436 129892185 +
Aip Aip06g02654 Chr06 116306975 116330887 +
Amo Amo06g2458 Chr06 86808008 86827462 +
Apr Apr4g1543 Chr4 16764579 16789283 +
Arst Arst6g02902 Chr6 92642360 92651867 +
Car Car03g01788 Chr03 63745019 63768378 -
Cca Cca07g00745 Chr07 11565481 11599625 +
Dod Dod01g1866 Chr01 53401960 53410261 -
Gso Gso16g0397 Chr16 4512523 4513842 +
Lapu Lapu1g00505 Chr1 16502511 16567117 +
Lasa Lasa3g02284 Chr3 541785537 541791461 -
Lja Lja1g1683 Chr1 18558398 18570926 +
Mal Mal3g3076 Chr3 105724616 105734961 -
Mtr Mtr7g2275 Chr7 39141503 39150449 -
Phac Phac1g01147 Chr1 11386721 11424169 +
Phco Phco2g00931 Chr2 11674511 11695069 +
Psa Psa3g2169 Chr3 190453743 190460606 +
Pumo Pumo5g02119 Chr5 57729901 57744963 +
Rops Rops8g02390 Chr8 55299147 55313576 -
Seca Seca2g03374 Chr2 103510830 103545988 -
Spst Spst1g00257 Chr1 3586751 3602074 +
Ssu Ssu4g1846 Chr4 33769521 33784612 +
Tpr Tpr6g1041 Chr6 9726483 9735317 -
Trre Trre13g02043 Chr13 17691718 17700338 +
Tsu Tsu07g02870 Chr07 33848855 33857501 -
Vian Vian2g01570 Chr2 32591337 32601920 -
Vifa Vifa1g06053 Chr1 946248680 946249211 -
Vivi Vivi6g03297 Chr6 123793772 123803131 -
Pvu Pvu1g0875 Chr1 15147569 15163821 +
Arst Arst6g02904 Chr6 92685617 92705909 +
Gso Gso19g0892 Chr19 35141012 35144469 -
Gso Gso16g0398 Chr16 4518024 4534295 +
Pvu Pvu1g0876 Chr1 15175016 15184973 +
Adu Adu06g02244 Chr06 93632459 93640404 +
Aed Aed9g1096 Chr9 8139791 8146467 +
Ahy Ahy16g2370 Chr16 130086288 130094531 +
Ahy Ahy6g2033 Chr6 99196291 99204340 +
Aip Aip06g02666 Chr06 116496262 116502057 +
Amo Amo06g2465 Chr06 86969517 86975652 +
Apr Apr4g1545 Chr4 16812216 16820795 +
Arst Arst6g02914 Chr6 92846694 92854330 +
Car Car03g01787 Chr03 63737765 63743618 -
Cca Cca07g00749 Chr07 11662993 11670733 +
Dod Dod01g1864 Chr01 53389548 53397944 -
Gma Gma16g00440 Chr16 4738909 4747030 +
Gso Gso16g0401 Chr16 4621174 4629203 +
Lal Lal25g1162 Chr25 15051077 15062087 -
Lasa Lasa3g02283 Chr3 541726486 541733926 -
Lja Lja1g1684 Chr1 18572284 18579349 +
Mal Mal3g3075 Chr3 105716371 105722121 -
Mepo Mepo3g02442 Chr3 34397586 34404037 -
Mesa Mesa25g01743 Chr25 21057804 21063812 +
Mtr Mtr7g2274 Chr7 39133649 39139752 -
Phac Phac1g01148 Chr1 11473442 11483690 +
Phco Phco2g00932 Chr2 11708152 11718500 +
Psa Psa3g2170 Chr3 190547168 190553635 +
Pste Pste5g00917 Chr5 5982010 5987820 -
Pumo Pumo5g02123 Chr5 57818790 57826709 +
Rops Rops8g02389 Chr8 55284340 55292100 -
Seca Seca2g03372 Chr2 103427372 103434783 -
Spst Spst1g00258 Chr1 3604264 3612735 +
Ssu Ssu4g1850 Chr4 33863962 33871418 +
Tpr Tpr6g1040 Chr6 9719185 9725700 -
Trre Trre13g02044 Chr13 17705006 17710047 +
Tsu Tsu07g02869 Chr07 33834652 33840828 -
Vian Vian2g01467 Chr2 30517395 30525955 +
Vifa Vifa5g01873 Chr5 545131447 545138518 -
Vimu Vimu6g03687 Chr6 34722262 34728719 -
Vivi Vivi6g03296 Chr6 123766229 123772756 -
Pvu Pvu1g0877 Chr1 15203983 15205872 +
Amo Amo06g2466 Chr06 86977199 86982240 +
Car Car03g01786 Chr03 63731097 63736912 -
Cca Cca07g00751 Chr07 11696433 11700217 +
Lasa Lasa3g02282 Chr3 541719449 541725121 -
Mal Mal3g3074 Chr3 105707535 105713382 -
Mepo Mepo3g02441 Chr3 34388684 34395785 -
Mesa Mesa25g01744 Chr25 21065328 21071832 +
Mtr Mtr7g2273 Chr7 39126070 39132785 -
Phac Phac1g01149 Chr1 11488482 11494469 +
Psa Psa3g2171 Chr3 190555268 190561914 +
Pumo Pumo5g02126 Chr5 57901253 57906084 +
Rops Rops8g02387 Chr8 55257972 55265951 -
Seca Seca2g03371 Chr2 103412344 103424007 -
Tpr Tpr6g1039 Chr6 9708356 9714447 -
Trre Trre13g02045 Chr13 17713122 17719436 +
Tsu Tsu07g02868 Chr07 33825894 33833647 -
Vian Vian2g01468 Chr2 30537459 30550064 +
Vifa Vifa5g01871 Chr5 545081834 545087646 -
Vimu Vimu6g03686 Chr6 34706267 34709595 -
Vivi Vivi6g03295 Chr6 123754596 123761825 -
Pvu Pvu1g0878 Chr1 15207583 15208669 -
Aev Aev06g1924 Chr06 16251192 16254501 -
Pvu Pvu1g0879 Chr1 15208738 15208849 +
Pvu Pvu1g0880 Chr1 15209690 15209946 +