Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3077 ATGTGGGCAATGGGGACAGACTTCCGGTATCAATATGCTGATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTGAATCAGGATGGGCGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATTCAAAATATGCAGCAAATGAGCAATGGCCTCTTAAAGTTGATGATTTCTTCCCATATGCAGATAAACCGAATGCATATTGGACTGGCTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGAGTGATGAGTGGTTACTATCAGGCAGCAAGGCAATTAGAATTTTTCAAAGGGAGGAATGCATCTGGACCAAATACTAATTCACTAGCAGAAGCTTTATCAATTGCTCAGCATCATGATGCAGTTAGTGGCACAGAGAGACAACATGTTGCTGCTGATTATGCACTGCGACTGTCATTGGGCTATAAGGAGGCAGAAGTGGTGGTCGCATCTGCCCTTGCTTTCTTGGTAAACCAAAAGTTAAGTTCGCAACAGGTGAAGCCAGTGTCGGACTTACAACAGTGTCCTCTACTCAATATAAGTTACTGTCCTTCATCAGAAGCTACGTTGAGCAATGGAAAAAGCTTGGTGATTGTTGTTTATAACCCACTTGCTTGGAAGAGGGAGGAAGTAATTCGAATTCCTGTTTCCACCACAGACATTTCTGTCAAAGATTCTGCTGGGAATGAAGTTGAGTCTCAAATTCTSCCACTATCCAATGCCACTTCAATCCTAAGAAAATACTATGTCAAAGCGTATSTAGGAAAATCTCCTGGTTCAGAACCAAAGTACTGGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAGCACATACATAGTCTCCAAGCCTAGACAGACAGGTAATCGTTCAACCATATCCAAGGTGCACAAATCAGAAAGAAGTACAAATACCAGCATAGAAGTTGGACAAGGGAATTTGAAGCTGCTTTATTCTGCAGATGAAAGAAAGCTTACTCATTATGTTAACAGTAGAAATCTTGTTAAAGCATCTGTTGAACAAACATACAGTTATTATTCTGGAAATGATGGAACAGATAAAGATCCTCAGGCTTCTGGGGCATATGTATTCCGCCCAAATGGATCATTTCCAATTAGATCTGATCGCCAGGAATCTTTTYCTGTTRTAAGTGGTCCAGTGCTGGATGAAGTTCATCAGCAGCTCAATCCATGGATATCTCAGATTACAAGGATATTCAAGGGAAAGGAACATGCTGAAGTTGAGTTCACAGTTGGGCCTATACCTGTGGATGATAACATTGGGAAAGAACTTATTACCCAGTTTACAACCTCAATGAAGACCAACAAAACATTCTACACAGATTCCAATGGACGTGACTTCATTAAAAGGATTCGAGATTTCCGGACAGACTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTATCCGGTTAACTTAGGAATATATGTGCAAGATAGCAACACAGAACTCTCAGTGTTGGTGGACCGTTCAGTTGGGGTTTCAAGCTTGGTAGACGGTCAAGTAGAGCTCATGCTCCACAGGAGGCTTATCCATGACGATACAAGAGGCGTTGGTGAGGCACTCAATGAAACAGTTTGCATTGCTGGTAGCTGTGAAGGTTTAACCATTCAAGGAAAACTGTACCTTAAAATTGATCCTATAGGTGAAGGTGCTAAGTGGCGTCGAACAGTTGGCCAGGAATTATATTCACCACTGTTGTTGGCATTCACAGAACAGGATGGGGATAATTTGTCAAATTTTCAATCATCAACGTTTTCTGGCATAGATTCTTCATACAGTTTCCCAAACAATACTGCTCTTTTAACACTCCAGGAACTTTACAGTGGAAAAATACTTCTAAGATTGGCTCACCTTTACGAGATTGAGGAGGACAAAGATTATTCAGCAATGGCAAGCGTGGAATTGTTAAAGCTGTTTCCTAACAAGAAGATAAGGAAAGTGACCGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAGGTTAGCATGGAAAGTAGAAGGCTCCACTAAAGAAACTAAGGTGGTGAGGGGAGGGCCTGTTGATCCTGAAAAGTTGGTGGTTGAACTTGCTCCAATGGAAATTAGGACATTTTTTATTGAATTTGCTTCCCTTCAAACGGTTCCTGAAGCAGAAAATCAAGCGGCAACGTAA 2217 0.4118 MWAMGTDFRYQYADSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDSKYAANEQWPLKVDDFFPYADKPNAYWTGYFTSRPALKGYVRVMSGYYQAARQLEFFKGRNASGPNTNSLAEALSIAQHHDAVSGTERQHVAADYALRLSLGYKEAEVVVASALAFLVNQKLSSQQVKPVSDLQQCPLLNISYCPSSEATLSNGKSLVIVVYNPLAWKREEVIRIPVSTTDISVKDSAGNEVESQILPLSNATSILRKYYVKAYXGKSPGSEPKYWLAFPVSVPPLGFSTYIVSKPRQTGNRSTISKVHKSERSTNTSIEVGQGNLKLLYSADERKLTHYVNSRNLVKASVEQTYSYYSGNDGTDKDPQASGAYVFRPNGSFPIRSDRQESFXVXSGPVLDEVHQQLNPWISQITRIFKGKEHAEVEFTVGPIPVDDNIGKELITQFTTSMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSNTELSVLVDRSVGVSSLVDGQVELMLHRRLIHDDTRGVGEALNETVCIAGSCEGLTIQGKLYLKIDPIGEGAKWRRTVGQELYSPLLLAFTEQDGDNLSNFQSSTFSGIDSSYSFPNNTALLTLQELYSGKILLRLAHLYEIEEDKDYSAMASVELLKLFPNKKIRKVTEMSLSANQERAEMEKKRLAWKVEGSTKETKVVRGGPVDPEKLVVELAPMEIRTFFIEFASLQTVPEAENQAAT* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3077 738 PANTHER ALPHA-MANNOSIDASE 1 727 - -
Amo16g3077 738 Pfam Glycosyl hydrolases family 38 N-terminal domain 1 65 IPR000602 GO:0004559|GO:0006013
Amo16g3077 738 Pfam Alpha mannosidase middle domain 70 162 IPR015341 GO:0004559|GO:0006013
Amo16g3077 738 Gene3D - 317 580 - -
Amo16g3077 738 Pfam Glycosyl hydrolases family 38 C-terminal domain 319 532 IPR011682 GO:0004559|GO:0006013
Amo16g3077 738 Gene3D - 190 316 IPR013780 -
Amo16g3077 738 SUPERFAMILY Families 57/38 glycoside transferase middle domain 69 164 IPR028995 -
Amo16g3077 738 SMART Alpha_mann_mid_2 70 144 IPR015341 GO:0004559|GO:0006013
Amo16g3077 738 Gene3D Glycoside hydrolase family 38, central domain 113 168 IPR037094 GO:0004559|GO:0006013
Amo16g3077 738 Gene3D Glycoside hydrolase family 38, central domain 34 112 IPR037094 GO:0004559|GO:0006013
Amo16g3077 738 SUPERFAMILY Galactose mutarotase-like 172 723 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo16g3077 738 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 615 720 IPR041147 -
Amo16g3077 738 SUPERFAMILY Glycoside hydrolase/deacetylase 1 68 IPR011330 GO:0005975
Amo16g3077 738 Gene3D Glycoside hydrolase 38, N terminal domain 1 33 IPR027291 -
Amo16g3077 738 Gene3D - 599 726 - -
Amo16g3077 738 PANTHER ALPHA-MANNOSIDASE 1 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3077 Amo-Chr16 133291780 133299429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3077 1 663 Glycoside Hydrolase AT3G26720 67.270 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3077 K01191 - gmx:100795651 1228.39