Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1041 ATGGAGAAAAAATTGATCTTTTTGTTGACCCTTTTGGGAGTACTCTTCTATGGAGGAGAATCTAAGTTTATAGTGTATAATACCTCACAGGGTATAGTCTCTGAGAAGCTCAATGTTCATCTGGTTGCTCATACTCATGATGATGTTGGATGGTTGAAAACTGTTGATCAGTACTATGTTGGTTCTAACAATTCTATTCAGGGGGCTTGTGTGCAAAATGTGTTGGATTCTATGGTGCATGCTCTATTGGCTGATAAGAACAGGAAATTTATCTATGTGGAGATGGCCTTTTTTCAGCGATGGTGGAATGATCAAAGTGAAGCTGTTCAGAATATAGTTAAGCAGCTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGAGCCATGTGTATGCATGACGAGGCAGTAACTCATTATATAGACATGATTGATCAGACCACACTTGGACATCGATTTCTTAAAGAGGAATTTGATGTGACTCCCAGAATCGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTACAGGCTTACTTATTGGGAGCCGAAGTTGGCTTTGATTCACTTTTCTTTGGTAGGATCGATTACCAGGATAGAGATAAACGGAAAAAGGATAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCATCTGCTCAGATCTTTGCTGGTGCATTCCCCGAGAACTATGAACCTCCTTCTGGATTTTACTTTGAAGTTAATGATGATTCACAAATAGTTCAAGATAACTTGGATTTGTTTGATTACAATGTTCAAGATAGAGTGAATGACTTCGTTGCTGCTGCATTATCACAAGCAAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTACCGGCAGTTGGACAAGCTTATTCATTATGTGAACAAGGATGGACGTGTCAATGCTCTGTACTCTACGCCATCCATATATACTGACGCAAAATATGCTGCAAATGAGTCATGGCCAATAAAGACTGATGATTTCTTCCCTTATTCAGATCGTGCAAATGGTTTCTGGACAGGATACTTTACCAGCAGGCCAGCTTTGAAACGCTATGTCAGATTATTGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATATTTTAGAGGGCGAAAGAGTTCAGGGCCAAATACAGATTCATTAGCGGATGCTTTAGCAATTGCTCAACACCACGATGCAGTCACTGGCACAGAAAAGCAGCACGTGGCCAATGATTATGCTAAACGATTGGCAATAGGCTACAAGGAGGCAGAGGAACTTGTTTCATCATCACTGGCTTCCTTGGTTGAATCAACATTGCCTACTAGAAGTCAGAATCCAGTTACAAAGTTTCAACAATGTCCGCTTTTGAACATAACATATTGTCCTGCAACAGAAGTTGAACTGGTTCAAGGAAAGAGTTTGGTTATTGTGGTTTATAACTCTCTTGGTTGGAAAAGGAATGAAGTGATTCGAGTTCCTGTTATTGATGGCGATGTTACAGTTCATGACTCTAACGGTGTAGAAATAGAATCTCAAATTTTACCTCTGGCTGAGGTATTTGTAAACTTAAGAAACTACTATGTCAAAGCTTATTTGGGTCAAAATCCAACCAAGACACCCAAGTATTGGCTTGCATTTACAGTTTCTGTACCACCATTTGGTTTTAGCACCTACACTGTCTCGACTGCCAAAAAAACAGGTTCCACCAGATCATCAGTATATACGCATCAAAGTCATGAAAAGTCTTCAATCGGTCAAGGAAGTTTAAAGCTTACATTTTCTACAGATCAAGAAAAACATACCAGTTATGTTAATGCAAGAAACATGGTTGAGGAACAAGTTGAACTGAGTTACCTTTACTATTCAGGATATAACGGAACTGATCAAAAAGATCCACAGAATGCCGGGGCCTATATCTTCCGTCCAAACGGTACATATCATATAAACCATGAAAGACAGGCTCCAGTGACTGTTCTGCATGGACCAATAATAGACGAAGTGCATCAACAAATCAATCCATGGATATATCAGATTACTAGACAGCATAAAGGAAAGGAACACGTTGAAGTAGAGTTTATTGTTGGTCCTATACCTATTGAAGATGGAGTTGGTAAAGAAGTTGCCACTCGGATTTCAACTACTATGGAAACCAATAAAACTTTCTACACAGATTCTAATGGGCGTGATTTTATCAAAAGGGTACGTGACTACAGAACAGACTGGAACCTGGAAGTGTATCAGCCCGTTGCCGGAAATTATTACCCAATTAATCTCGGGATATACATAATGGATAATAAGACAGAATTCTCAGTTTTGGTGGATAGAGCTATTGGAGGATCCAGCTTACAAGATGGACAAATCGAGTTGATGCTCCACAGGAGATTGCTGCTTGATGATTCGAGAGGTGTAGCAGAGGCCCTAAATGAAACAGACTGTGTTGCTGACAATTGCAGGGGTCTAACTGTTCAAGGTAAATATTATTATAGAATAGATCCTTTGGGTGAAGGAGCTAAATGGCGACGTACTTTTGGCCAGGAAATATATTCTCCACTTTTGTTAGCCTTTTCTGAAAAGGATGATAAAGAAGACTGGATGAATACCCGTGTAACAACATTTTCAGGATTTGACTCTTCTTACACATTACCAGAAAACATCGTTATTATAACATTACAGGAACTTGATGATGGGACAGTTCTCCTTCGATTAGCGCATTTATATGAGATTGAAGAAGACAAGGATCTCTCCGTAATTACAAGCGTGGAGTTGAAAAAGCTCTTCCCAGGAAAGAAGATCAAAGAAGTGAAAGAGAAGAACTTATCTGCAAATCAAGAAAGGATAGAGATGGAGAAGAAAAGACTTGTTTGGAAAGTAGAAGGGTCATCAGGAAATGAAGGTGTTTCAAGAGGAGGTCCAGTTGATCCCAAAGAGCTAACTGTGGAACTTGCTCCAATGCAAATCCGCACTTTTATCATTTACTTTGATCATAGTAGCCATCTTTTTGATGCATTGTAG 3048 0.395 MEKKLIFLLTLLGVLFYGGESKFIVYNTSQGIVSEKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFQRWWNDQSEAVQNIVKQLVSSGQLEFINGAMCMHDEAVTHYIDMIDQTTLGHRFLKEEFDVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRDKRKKDKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPSGFYFEVNDDSQIVQDNLDLFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWYRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYAANESWPIKTDDFFPYSDRANGFWTGYFTSRPALKRYVRLLSGYYLAARQLEYFRGRKSSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYKEAEELVSSSLASLVESTLPTRSQNPVTKFQQCPLLNITYCPATEVELVQGKSLVIVVYNSLGWKRNEVIRVPVIDGDVTVHDSNGVEIESQILPLAEVFVNLRNYYVKAYLGQNPTKTPKYWLAFTVSVPPFGFSTYTVSTAKKTGSTRSSVYTHQSHEKSSIGQGSLKLTFSTDQEKHTSYVNARNMVEEQVELSYLYYSGYNGTDQKDPQNAGAYIFRPNGTYHINHERQAPVTVLHGPIIDEVHQQINPWIYQITRQHKGKEHVEVEFIVGPIPIEDGVGKEVATRISTTMETNKTFYTDSNGRDFIKRVRDYRTDWNLEVYQPVAGNYYPINLGIYIMDNKTEFSVLVDRAIGGSSLQDGQIELMLHRRLLLDDSRGVAEALNETDCVADNCRGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKEDWMNTRVTTFSGFDSSYTLPENIVIITLQELDDGTVLLRLAHLYEIEEDKDLSVITSVELKKLFPGKKIKEVKEKNLSANQERIEMEKKRLVWKVEGSSGNEGVSRGGPVDPKELTVELAPMQIRTFIIYFDHSSHLFDAL* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1041 1015 Gene3D Glycoside hydrolase 38, N terminal domain 37 317 IPR027291 -
Tpr6g1041 1015 Pfam Glycosyl hydrolases family 38 N-terminal domain 38 349 IPR000602 GO:0004559|GO:0006013
Tpr6g1041 1015 Pfam Glycosyl hydrolases family 38 C-terminal domain 597 813 IPR011682 GO:0004559|GO:0006013
Tpr6g1041 1015 SMART Alpha_mann_mid_2 354 428 IPR015341 GO:0004559|GO:0006013
Tpr6g1041 1015 Gene3D - 575 861 - -
Tpr6g1041 1015 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 896 1002 IPR041147 -
Tpr6g1041 1015 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 447 IPR028995 -
Tpr6g1041 1015 Coils Coil 943 963 - -
Tpr6g1041 1015 Gene3D Glycoside hydrolase family 38, central domain 318 396 IPR037094 GO:0004559|GO:0006013
Tpr6g1041 1015 Gene3D - 464 574 IPR013780 -
Tpr6g1041 1015 SUPERFAMILY Glycoside hydrolase/deacetylase 26 350 IPR011330 GO:0005975
Tpr6g1041 1015 PANTHER ALPHA-MANNOSIDASE 15 1008 - -
Tpr6g1041 1015 Gene3D - 881 1010 - -
Tpr6g1041 1015 SUPERFAMILY Galactose mutarotase-like 453 1005 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr6g1041 1015 CDD GH38N_AMII_LAM_like 37 313 - -
Tpr6g1041 1015 Gene3D Glycoside hydrolase family 38, central domain 397 451 IPR037094 GO:0004559|GO:0006013
Tpr6g1041 1015 PANTHER ALPHA-MANNOSIDASE 15 1008 - -
Tpr6g1041 1015 Pfam Alpha mannosidase middle domain 355 446 IPR015341 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1041 Tpr-Chr6 9726483 9735317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1041 1 919 Glycoside Hydrolase AT5G13980 71.582 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1041 K01191 - gmx:100776282 1733.38