Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1542 ATGGCCAATGCGGTGCTATTCACCGTTTTGATGGCGGTGATTTGGCTTGCGGAATCAGAATACATAGAGTACAACACGACGCAGAGAATAGTCTCAGACAAGATAAACGTGCACTTGGTACCTCACTCCCACGACGATGTTGGGTGGCTCAAGACCGTTGATCAGTACTACGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTGCAGAACGTGCTGGATTCTGTTATATCCGCGTTGTTGGAGGACAAGAATCGCAAATTTATCTATGTTGAAATGGCATTTTTCCAAAGATGGTGGAGACAGCAAAGTAAAGCTATGAAAATTAAAGTCAAGGAGCTTGTCAACTCGGGTCAGTTGGAATTCATAAATGGTGGAATGTGTATGCATGATGAGGCCACCCCGCATTACATTGACCTAATTGACCAGACCACTCTTGGGCATCAATTTATTAAAGAGGAGTTTGGTAAGGTTCCAAGAGTTGGTTGGCAGATTGATCCCTTTGGTCATTCTGCAGTTCAGGCTTACTTGCTTGGTGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAAGACTCTAGAAGTTATTTGGCAGGGTTCCAGGTCTCTTGGCTCTTCTTCACAAATATTCACTGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACGTTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTACTGTTTGACTATAATGTTCAAGAAAGAGTCAACGATTTTGTATCTGCCGCCTTGGCTCAGGCTAACGTGACCAAAACAGATCACATTATGTGGACAATGGGGACCGACTTCCGTTATCAGTATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTAAATCAGGATGGGCGTGTCAATGCATTATACTCAACACCATCTATCTACACTGATGCAAAGTATGCAGCTAATGAGTATTGGCCTCTTAAAGTTGATGATTTCTTCCCGTATGCAGATCACCCAAATGCATATTGGACTGGATATTTTACAAGTAGGCCAGCTTTGAAGGGTTATGTCAGAGTGATGAGTGGTTACTATCAGGTAGCAAGGCAGTTGGAATATTTTAAAGGCAGGAATGAAACAGGACCAAATACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCTGTTAGTGGCACAGAAAGACAGCATGTTGCTTCTGATTATGCAAAGCGACTCTCAATGGGTTATGCAGAGGCAGAAAGGTTGGTTGCATCTGCACTTGCTTTCATGGTAAACCAAAGATTAAGTTCGCATGGGTTGAACCCAGTGACAGACTTCCAACAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCATCAGAAGCTACCTTGGCTGATGGAAAAAGCTTGGTGATTGTTGTTTATAATCCTCTGGCTTGGAAAAGAGAAGATATAATTCGAATTCCTGTTTCCAGTGAAAAGGTTTTTGTCCAGGATTCTACTGGGAAGGAAATTGAGTCTCAGCTTCTGCCTGTGTCTAATGCTACTTTGACCATCAGAAAACGTTATATTGAAGCATATTTCGGAAAAGCTCCTGGTGGTGAACTTAAGTATTGGCTTGCATTTCCAGTGTCTGTACCCCCCCTTGGATTCAGCACCTATACAGTGTCAAGCTCTAAACAGACAAGTCATAGTTCAACTATCTCAAAGATGCACAGATCAGAAGGAAGTATGAATAAAAGCATAGAAGTTGGACAAGGGAATCTAAAGCTACTTTATTCAGCAGATGAAGGAAAACTGACTCACTATGTTAACAGTAGAACTATGGTTACAGCATCGGTTGAACAATCATACAGTTATTATTCAGGAAATGATGGGACTGACAAAGATCCTCAGGCTTCTGGGGCATATGTCTTCCGTCCAAATGGCTCATTTCCCATTAAATCTGATCACAAGGTATCTTTTTCTGTCCTACGTGGTCCAATATTAGATGAAGTACATCAACAGATCAACCCATGGGTATCCCAGATTACAAGGATATTCAAGGCAAAGGATCATGCTGAAATTGAGTTCACAGTTGGGCCTATACCGGTGGATGATGGCATTGGGAAAGAAATAATTACTCAATTTGCAACTACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGGCGTGACTTCATTAAAAGGATTCGAGATTTCAGGACCGACTGGGATCTACAGGTGAACCAACCCATAGCTGGAAACTATTACCCAGTTAATTTAGGAATATATGTGCAAGATAGCAGCACGGAACTTTCAGTGTTGGTGGACCGCTCAGTTGGGGGTTCCAGCTTGGAAGATGGTCAAATGGAGCTGATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTAGGTGAGGTACTCAATGAAACAGTTTGCATTGCTGATAACTGTGAAGGCTTAACTATTCAAGGAAAACTTTACCTGAGAATTGACCGTATAGGTGAAGGTGCAAAGTGGCGTCGCACAGTGGGGCAGGAATTATATTCCCCAATGCTGTTGGCCTTCACAGAACAGGAAGGGGATAATTGGTTGCATTTCCATCCATCATCATTTTCTGGCATAGATTCTTCCTACAGTTTACCTAACAACACGGCTCTTTTAACCCTCCAGGAATTTAAAAATGGAAAAGTACTCCTAAGATTGGCTCACCTTTACGAGTTAGGGGAGGACAAAGATTACTCAGTAATGGAAAGTGTGGAATTGAAAAAATTGTTTCCCAACAAAAAGATAATTAAAGTGACAGAGATGAGTTTGTCTGCCAATCAAGAAAGAGCTGAAATCGAAAAGAAGAAGTTGGTTTGGCAGGTAGAAGGCTCCACTGAAGAACCTAAGGTGGTGAGAGGAGGACCTGTTGATCCTACAAAGCTGTTGGTTGAACTTGCTCCAATGGAGATTCGGACATTCTTTATTGACTTTGATTCCCTCCAAACATTTTATGAATCAGAAAATCATGTGGCAATGTGA 3063 0.4198 MANAVLFTVLMAVIWLAESEYIEYNTTQRIVSDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSKAMKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVIWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTKTDHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEYWPLKVDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSGYYQVARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYAKRLSMGYAEAERLVASALAFMVNQRLSSHGLNPVTDFQQCPLLNISYCPPSEATLADGKSLVIVVYNPLAWKREDIIRIPVSSEKVFVQDSTGKEIESQLLPVSNATLTIRKRYIEAYFGKAPGGELKYWLAFPVSVPPLGFSTYTVSSSKQTSHSSTISKMHRSEGSMNKSIEVGQGNLKLLYSADEGKLTHYVNSRTMVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFPIKSDHKVSFSVLRGPILDEVHQQINPWVSQITRIFKAKDHAEIEFTVGPIPVDDGIGKEIITQFATTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSSTELSVLVDRSVGGSSLEDGQMELMLHRRLLHDDARGVGEVLNETVCIADNCEGLTIQGKLYLRIDRIGEGAKWRRTVGQELYSPMLLAFTEQEGDNWLHFHPSSFSGIDSSYSLPNNTALLTLQEFKNGKVLLRLAHLYELGEDKDYSVMESVELKKLFPNKKIIKVTEMSLSANQERAEIEKKKLVWQVEGSTEEPKVVRGGPVDPTKLLVELAPMEIRTFFIDFDSLQTFYESENHVAM* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1542 1020 SUPERFAMILY Families 57/38 glycoside transferase middle domain 351 446 IPR028995 -
Apr4g1542 1020 CDD GH38N_AMII_LAM_like 35 311 - -
Apr4g1542 1020 Pfam Glycosyl hydrolases family 38 N-terminal domain 36 347 IPR000602 GO:0004559|GO:0006013
Apr4g1542 1020 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 897 1002 IPR041147 -
Apr4g1542 1020 Gene3D - 472 597 IPR013780 -
Apr4g1542 1020 Gene3D Glycoside hydrolase family 38, central domain 316 394 IPR037094 GO:0004559|GO:0006013
Apr4g1542 1020 SMART Alpha_mann_mid_2 352 426 IPR015341 GO:0004559|GO:0006013
Apr4g1542 1020 Pfam Alpha mannosidase middle domain 352 443 IPR015341 GO:0004559|GO:0006013
Apr4g1542 1020 Gene3D Glycoside hydrolase 38, N terminal domain 35 315 IPR027291 -
Apr4g1542 1020 Gene3D Glycoside hydrolase family 38, central domain 395 449 IPR037094 GO:0004559|GO:0006013
Apr4g1542 1020 SUPERFAMILY Galactose mutarotase-like 451 1005 IPR011013 GO:0003824|GO:0005975|GO:0030246
Apr4g1542 1020 Gene3D - 598 862 - -
Apr4g1542 1020 PANTHER ALPHA-MANNOSIDASE 8 1009 - -
Apr4g1542 1020 Pfam Glycosyl hydrolases family 38 C-terminal domain 600 814 IPR011682 GO:0004559|GO:0006013
Apr4g1542 1020 PANTHER ALPHA-MANNOSIDASE 8 1009 - -
Apr4g1542 1020 Gene3D - 882 1009 - -
Apr4g1542 1020 SUPERFAMILY Glycoside hydrolase/deacetylase 24 350 IPR011330 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1542 Apr-Chr4 16747935 16763182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1542 6 943 Glycoside Hydrolase AT3G26720 74.015 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1542 K01191 - gmx:100795651 1878.6