Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0893 ATGATGGTCAATGCGGTGGCAGTGGTATTCGCCGTTTTGGTGGCGGCGATTTGGGTTGCGGAATCAGAGTACATAGAGTACAACACAACGCAGAGGATAGTCCCAGACAAATTAAACGTGCACTTGGTACCTCACTCCCACGACGATGTTGGGTGGCTCAAGACCGTGGATCAGTACTACGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTGCAGAATGTGCTGGATTCTGTGATATCTGCTCTCTTGGAGGACAAGAATCGCAAGTTTATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGACAGCAAAGTAAAGCAACGAAAATTAAAGTCAAGGAGCTTGTCAACTCGGGTCAGTTGGAATTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACCCCGCATTACATTGATCTAATTGACCAGACCACTCTTGGGCATCAATTTATCAAAGAGGAATTTGATAAGGTTCCAAGAGTTGGTTGGCAGATTGACCCATTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGTGCCGAGCTAGGATTCGATTCACACTTTTTTGCTAGAATCGATTACCAAGATAGAGCTAAGCGATTGAAGGAGAAAACTCTTGAGGTTATTTGGCAGGGTTCCAGGTCTCTTGGCTCTTCTTCACAAATATTTACCGGGATATTTCCCAGGCATTACGATCCTCCTGATGGTTTCACATTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTACTATTTGACTATAATGTTCAAGAAAGGGTCAACGATTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATTATGTGGGCAATGGGGACAGACTTCCGTTATCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTACGTCAATCAGGATGGACGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTGATGAGTATTGGCCTCTTAAAGTTGATGATTTCTTCCCGTATGCAGATCACCCAAATGCATATTGGACTGGATATTTTACAAGTAGGCCAGCTTTGAAGGGCTATGTGAGATTCATGAGTGCTTACTATCAGGCAGCACGACAATTGGAATATTTTAAAGGGAGGAATGAAACAGGACCAAATACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTTAGTGGCACAGAAAGGCAACATGTTGCTTCTGATTATGCACTGCGACTCTCAATGGGATATGAAGAGGCAGAAAGGTTGGTTGCATCTGCCCTTGCTTCCTTGGTAAACCAAAGATTAAGTTCGTATGGGGTGAATCCAGTGACAGACATCCAGCAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCAGCAGAAGCTACATTGATTAATGGAAAGAGCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTTTCCACTGGACAGGTTTTTGTTCAGGATTTTTCTGGGAATAAAATTGAGTCTCAGATTCTGCCTCTGTCGAATGCTACTTTGACTATGAGAAAACATTATGTCAGAGCATATATAGGAAAAGCTCCTGGGGGCGACACACTCAAGTCTTGGCTTGCATTTCCAGTGTCTGTTCCTCCCCTTGGTTTCAGCACCTATATAGTGTCAAGCTCTAAACAGTCAAGTCATAGTTCAACTATCTCAAAGATATACATATCAGAAGGAAGTACTAATAAAAGCATAGAAGTTGGAAAAGGGAATTTAAAGCTACTTTATTCAGAAAATGAAGGAAGACTGACTCACTATGTAAACAGTAGAACTCTGGTTACAACATCAGTTGAACAATCATACAGTTATTATTCTGGAAATGATGGGACTGACAAAGATCCTCAGGCTTCTGGGGCATATGTTTTCCGTCCAAATGGCTCATTTTCCATTAAATCAGATCATCAGGCATCTTTTACTGTCCTGCGTGGTCCAATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCCCAGATTACGAGGATATTCAAGGCAAAAGAACATGCTGAAATTGAGTTCACAGTTGGGCCTATTCCTGTGGATGATGACATTGGGAAAGAAATTATTACACAATTTAAAACTACAATGAAGACCAACAAGACATTCTACACTGATTCTAATGGACGTGACTTCATTAAGAGGATTCGAGATTTCAGGACAGACTGGGATCTACAAGTGAACCAACCCATTGCTGGAAACTATTACCCAGTTAATTTAGGAATATATGTACAAGATAGTAGTATGGAATTATCTGTGTTGGTGGACCGCTCAGTTGGAGGTTCCAGCTTGGAAGATGGCCAAGTAGAGCTGATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTAGGTGAGGTACTCAATGAAACAGTTTGCGTTGCTGATAAGTGTGAGGGCCTAACAATTCAAGGAAAACTGTATCTTAGAATTGACCATAAAGGTGAAGCTGCTAAGTGGCGTCGCACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAACAGGATGGGGATAATTGGTTGCATTTCAGTCCATCCACATTTTCTGGCATAGATTCTTCCTACAGTTTACCCGACAACACTGCTCTTTTAACCCTCCAGGAATTTAAAAATGGAAAAGTGCTCCTAAGATTGGCTCACCTTTATGAGATCGGAGAGGACAAAAATTACTCACTAACGGCAAGTGTGGAATTGAAAAAGTTGTTTCCTAATAAGAAGATCAATAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTCAAATGGAAAAGAGGAAGCTAGATTGGAAGGTAGAAGGCTCCACTGAAGAACCGAAGGTGGTGAGAGGAGGACCTGTTGATCCTACGAAGTTGGTGGTTGAACTTGCTCCGATGGAGATTCGGACATTCTTTATTGAATTTGATCCCCTCCAAACAGTTCCTGTACCAGAAAATCATGTGGCAATGTAG 3075 0.4195 MMVNAVAVVFAVLVAAIWVAESEYIEYNTTQRIVPDKLNVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSKATKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFDKVPRVGWQIDPFGHSAVQAYLLGAELGFDSHFFARIDYQDRAKRLKEKTLEVIWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTKTNHIMWAMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAADEYWPLKVDDFFPYADHPNAYWTGYFTSRPALKGYVRFMSAYYQAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSMGYEEAERLVASALASLVNQRLSSYGVNPVTDIQQCPLLNISYCPPAEATLINGKSLVIVVYNPLAWKREDVIRIPVSTGQVFVQDFSGNKIESQILPLSNATLTMRKHYVRAYIGKAPGGDTLKSWLAFPVSVPPLGFSTYIVSSSKQSSHSSTISKIYISEGSTNKSIEVGKGNLKLLYSENEGRLTHYVNSRTLVTTSVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFSIKSDHQASFTVLRGPILDEVHQQLNPWVSQITRIFKAKEHAEIEFTVGPIPVDDDIGKEIITQFKTTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSSMELSVLVDRSVGGSSLEDGQVELMLHRRLLHDDARGVGEVLNETVCVADKCEGLTIQGKLYLRIDHKGEAAKWRRTVGQELYSPLLLAFTEQDGDNWLHFSPSTFSGIDSSYSLPDNTALLTLQEFKNGKVLLRLAHLYEIGEDKNYSLTASVELKKLFPNKKINKVTEMSLSANQERAQMEKRKLDWKVEGSTEEPKVVRGGPVDPTKLVVELAPMEIRTFFIEFDPLQTVPVPENHVAM* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0893 1024 Gene3D - 886 1011 - -
Gso19g0893 1024 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 901 1006 IPR041147 -
Gso19g0893 1024 Pfam Alpha mannosidase middle domain 355 447 IPR015341 GO:0004559|GO:0006013
Gso19g0893 1024 CDD GH38N_AMII_LAM_like 38 314 - -
Gso19g0893 1024 Gene3D - 475 601 IPR013780 -
Gso19g0893 1024 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 818 IPR011682 GO:0004559|GO:0006013
Gso19g0893 1024 SUPERFAMILY Glycoside hydrolase/deacetylase 27 353 IPR011330 GO:0005975
Gso19g0893 1024 SUPERFAMILY Galactose mutarotase-like 454 1009 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso19g0893 1024 Gene3D Glycoside hydrolase family 38, central domain 319 397 IPR037094 GO:0004559|GO:0006013
Gso19g0893 1024 PANTHER ALPHA-MANNOSIDASE 11 1013 - -
Gso19g0893 1024 SMART Alpha_mann_mid_2 355 429 IPR015341 GO:0004559|GO:0006013
Gso19g0893 1024 Pfam Glycosyl hydrolases family 38 N-terminal domain 39 350 IPR000602 GO:0004559|GO:0006013
Gso19g0893 1024 SUPERFAMILY Families 57/38 glycoside transferase middle domain 354 449 IPR028995 -
Gso19g0893 1024 PANTHER ALPHA-MANNOSIDASE 11 1013 - -
Gso19g0893 1024 Gene3D Glycoside hydrolase 38, N terminal domain 38 318 IPR027291 -
Gso19g0893 1024 Gene3D - 602 866 - -
Gso19g0893 1024 Gene3D Glycoside hydrolase family 38, central domain 398 453 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0893 Gso-Chr19 35146106 35163904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0893 1 949 Glycoside Hydrolase AT3G26720 72.287 0.0 1464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0893 K01191 - gmx:100795651 2041.93