Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0881 . . Adu06g02245 Aed9g1099 Aev06g1752 Ahy16g2371 Ahy6g2034 Aip06g02667 . . Amo06g2479 Apr4g1547 Arst6g02915 Bach8g01391 . Bva04g01907 . . . Dod01g1861 . . . Gma16g00442 Gso19g0884 Gso16g0402 . . . . . . Lapu1g00507 . . . . . Lja1g1686 . . . . . . Phco2g00933 . Psa3g3858 . . . . . . . . . . . . . . . .
Pvu1g0882 . . Adu06g02246 Aed9g1100 Aev06g1753 Ahy16g2372 Ahy6g2035 Aip06g02668 . . Amo06g2480 Apr4g1548 Arst6g02916 . . . Car03g01785 Cca07g00752 . . . . . Gma16g00443 Gso19g0883 Gso16g0403 . . . . . . Lapu1g00508 Lasa3g00631 . . . . Lja1g1687 Mal3g3073 Mepo3g02440 Mesa25g01745 . Mtr7g2272 Phac1g01150 Phco2g00934 . Psa3g2174 Pste5g00893 Pumo5g02127 . Seca2g03370 . Ssu4g1854 . Tpr6g1038 Trre13g02046 . Vian2g01469 . Vimu6g03685 . Vivi6g03291 .
Pvu1g0883 . . Adu06g02247 . . Ahy16g2373 Ahy6g2036 Aip06g02670 . . Amo06g2481 Apr4g1549 Arst6g02918 . . . Car03g01784 Cca07g00753 . . . . . Gma16g00444 Gso19g0882 . . Lal25g1165 . . . . . . . . . . . . . Mesa25g01746 . Mtr7g2271 . . Prci1g3677 . . . . . . Ssu4g1855 Sto8g1629 Tpr6g1037 . . . . . . . .
Pvu1g0884 . . Adu06g02249 Aed9g1101 Aev06g1755 Ahy16g2375 Ahy6g2037 . . . Amo06g2483 Apr4g1550 Arst6g02919 Bach8g01392 . Bva04g01906 Car03g01783 . . Dod01g1859 . . . Gma16g00445 Gso19g0881 Gso16g0404 . . Lal10g0204 . . . Lapu1g00510 Lasa3g02279 . . . . Lja1g1689 Mal3g3071 Mepo3g02438 Mesa25g01747 . Mtr7g2270 Phac1g01152 Phco2g00936 . Psa3g2175 . . . . . Ssu4g1856 . Tpr6g1036 Trre13g02048 Tsu07g02865 . . Vimu6g03682 . Vivi6g03290 .
Pvu1g0885 Acco02g0800 Accr2g02912 Adu06g02251 Aed9g1103 Aev06g1764 Ahy16g2377 Ahy6g2039 Aip06g02677 Alju01g0802 . Amo06g2485 Apr4g1554 Arst6g02923 Bach8g01395 . Bva04g01904 Car03g01781 Cca07g00754 Dere01g2058 Dod01g1857 Enph2g0622 Glsi02g0492 . Gma16g00447 Gso19g0879 Gso16g0406 . . . . . . Lapu1g00511 . . Lele06g0453 . Lele08g0466 Lja1g1691 Mal3g3069 Mepo3g02436 Mesa25g01749 Mibi02g0713 Mtr7g2268 . Phco2g00937 Prci1g3679 Psa3g2179 Pste5g00875 Pumo5g02131 Rops8g02383 Seca10g05021 . Ssu4g1858 Sto8g1630 Tpr6g1030 Trre13g02050 Tsu07g02860 Vian2g01472 . Vimu6g03680 . Vivi3g02246 .
Pvu1g0886 Acco02g0795 Accr2g02915 Adu06g02255 . Aev06g1769 Ahy16g2379 Ahy6g2041 Aip06g02691 Alju01g0798 . Amo06g2488 . Arst6g02925 . Bisa03g3527 . Car03g01780 Cca07g00755 Dere01g2056 Dod01g1853 Enph2g0620 Glsi12g2106 . Gma16g00448 . Gso16g0407 . . . . . . Lapu1g00512 Lasa3g02275 . . . . Lja1g1692 Mal3g3068 Mepo3g02435 Mesa25g01753 Mibi02g0709 Mtr7g2267 . Phco2g00938 Prci1g3684 . Pste5g00874 Pumo5g02133 Rops8g02382 Seca2g03358 . Ssu4g1859 Sto8g1631 Tpr6g1027 Trre13g02052 Tsu07g02859 Vian2g01473 Vifa5g01864 Vimu6g03679 . Vivi6g03287 .
Pvu1g0887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00941 . . . . . . . . . . . . . . Vimu6g03676 . . .
Pvu1g0889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00942 . . . . . . . . . . . . . . Vimu6g03675 . . .
Pvu1g0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0881 Chr1 15211350 15212885 +
Adu Adu06g02245 Chr06 93641047 93646113 +
Aed Aed9g1099 Chr9 8164498 8170005 +
Aev Aev06g1752 Chr06 13993720 14012246 +
Ahy Ahy16g2371 Chr16 130095327 130100447 +
Ahy Ahy6g2034 Chr6 99205131 99210235 +
Aip Aip06g02667 Chr06 116503500 116508580 +
Amo Amo06g2479 Chr06 87172643 87177873 +
Apr Apr4g1547 Chr4 16840087 16846228 +
Arst Arst6g02915 Chr6 92855272 92860436 +
Bach Bach8g01391 Chr8 9548903 9549538 +
Bva Bva04g01907 Chr04 19417155 19422636 -
Dod Dod01g1861 Chr01 53376611 53376982 +
Gma Gma16g00442 Chr16 4757221 4762428 +
Gso Gso19g0884 Chr19 35048208 35062720 -
Gso Gso16g0402 Chr16 4638396 4644034 +
Lapu Lapu1g00507 Chr1 16594970 16614473 +
Lja Lja1g1686 Chr1 18605409 18612887 +
Phco Phco2g00933 Chr2 11731994 11737424 +
Psa Psa3g3858 Chr3 352684797 352689575 -
Pvu Pvu1g0882 Chr1 15213908 15214875 +
Adu Adu06g02246 Chr06 93647405 93650139 +
Aed Aed9g1100 Chr9 8170505 8173160 +
Aev Aev06g1753 Chr06 14013693 14015493 +
Ahy Ahy16g2372 Chr16 130108906 130109979 +
Ahy Ahy6g2035 Chr6 99211503 99212788 +
Aip Aip06g02668 Chr06 116515875 116516653 +
Amo Amo06g2480 Chr06 87179025 87180843 +
Apr Apr4g1548 Chr4 16863131 16864532 +
Arst Arst6g02916 Chr6 92861607 92862772 +
Car Car03g01785 Chr03 63729321 63730649 -
Cca Cca07g00752 Chr07 11703973 11705129 +
Gma Gma16g00443 Chr16 4763746 4766039 +
Gso Gso19g0883 Chr19 35045511 35046810 -
Gso Gso16g0403 Chr16 4645184 4647288 +
Lapu Lapu1g00508 Chr1 16612966 16614473 +
Lasa Lasa3g00631 Chr3 61772418 61774528 +
Lja Lja1g1687 Chr1 18613269 18614813 +
Mal Mal3g3073 Chr3 105704195 105705283 -
Mepo Mepo3g02440 Chr3 34386046 34387822 -
Mesa Mesa25g01745 Chr25 21074380 21075563 +
Mtr Mtr7g2272 Chr7 39123842 39125266 -
Phac Phac1g01150 Chr1 11495432 11496607 +
Phco Phco2g00934 Chr2 11738853 11739552 +
Psa Psa3g2174 Chr3 190577195 190579123 +
Pste Pste5g00893 Chr5 5759208 5760669 +
Pumo Pumo5g02127 Chr5 57907501 57908748 +
Seca Seca2g03370 Chr2 103403120 103404267 -
Ssu Ssu4g1854 Chr4 33905829 33907081 +
Tpr Tpr6g1038 Chr6 9706070 9707998 -
Trre Trre13g02046 Chr13 17720442 17721374 +
Vian Vian2g01469 Chr2 30551302 30551721 +
Vimu Vimu6g03685 Chr6 34704338 34705029 -
Vivi Vivi6g03291 Chr6 123725705 123726523 -
Pvu Pvu1g0883 Chr1 15239192 15242946 +
Adu Adu06g02247 Chr06 93680578 93686912 +
Ahy Ahy16g2373 Chr16 130123204 130137334 +
Ahy Ahy6g2036 Chr6 99246065 99254562 +
Aip Aip06g02670 Chr06 116535127 116539278 +
Amo Amo06g2481 Chr06 87213557 87218421 +
Apr Apr4g1549 Chr4 16866039 16868710 +
Arst Arst6g02918 Chr6 92895497 92900397 +
Car Car03g01784 Chr03 63726141 63728579 -
Cca Cca07g00753 Chr07 11710935 11713829 +
Gma Gma16g00444 Chr16 4768729 4771026 +
Gso Gso19g0882 Chr19 35037014 35039574 -
Lal Lal25g1165 Chr25 15088321 15090774 -
Mesa Mesa25g01746 Chr25 21094680 21097115 +
Mtr Mtr7g2271 Chr7 39104063 39109008 -
Prci Prci1g3677 Chr1 53294908 53303448 +
Ssu Ssu4g1855 Chr4 33923602 33926603 +
Sto Sto8g1629 Chr8 10464428 10466872 +
Tpr Tpr6g1037 Chr6 9700443 9703672 -
Pvu Pvu1g0884 Chr1 15243899 15244753 -
Adu Adu06g02249 Chr06 93690988 93692393 -
Aed Aed9g1101 Chr9 8173684 8174259 -
Aev Aev06g1755 Chr06 14027447 14028043 -
Ahy Ahy16g2375 Chr16 130139227 130140057 -
Ahy Ahy6g2037 Chr6 99256480 99257308 -
Amo Amo06g2483 Chr06 87223941 87224812 -
Apr Apr4g1550 Chr4 16868635 16869798 -
Arst Arst6g02919 Chr6 92905906 92906717 -
Bach Bach8g01392 Chr8 9550085 9550663 -
Bva Bva04g01906 Chr04 19416204 19416972 +
Car Car03g01783 Chr03 63724682 63725599 +
Dod Dod01g1859 Chr01 53364766 53366038 +
Gma Gma16g00445 Chr16 4772721 4773642 -
Gso Gso19g0881 Chr19 35034341 35035153 +
Gso Gso16g0404 Chr16 4654294 4655142 -
Lal Lal10g0204 Chr10 2774011 2774598 -
Lapu Lapu1g00510 Chr1 16626060 16627136 -
Lasa Lasa3g02279 Chr3 541707745 541708329 +
Lja Lja1g1689 Chr1 18625512 18626361 -
Mal Mal3g3071 Chr3 105698280 105698861 +
Mepo Mepo3g02438 Chr3 34369095 34369903 +
Mesa Mesa25g01747 Chr25 21101364 21101945 -
Mtr Mtr7g2270 Chr7 39101393 39102231 +
Phac Phac1g01152 Chr1 11509357 11510207 -
Phco Phco2g00936 Chr2 11756663 11757241 -
Psa Psa3g2175 Chr3 190579593 190580177 -
Ssu Ssu4g1856 Chr4 33926742 33927299 -
Tpr Tpr6g1036 Chr6 9695220 9696003 +
Trre Trre13g02048 Chr13 17735854 17736420 -
Tsu Tsu07g02865 Chr07 33812431 33813182 +
Vimu Vimu6g03682 Chr6 34688376 34689748 +
Vivi Vivi6g03290 Chr6 123723762 123724492 +
Pvu Pvu1g0885 Chr1 15261013 15264731 -
Acco Acco02g0800 Chr02 5654770 5659294 +
Accr Accr2g02912 Chr2 64981730 64986249 -
Adu Adu06g02251 Chr06 93705829 93711324 -
Aed Aed9g1103 Chr9 8181533 8184826 -
Aev Aev06g1764 Chr06 14108836 14112977 -
Ahy Ahy16g2377 Chr16 130208221 130212111 +
Ahy Ahy6g2039 Chr6 99270884 99279629 -
Aip Aip06g02677 Chr06 116616106 116618631 +
Alju Alju01g0802 Chr01 5939508 5944038 +
Amo Amo06g2485 Chr06 87238130 87247650 -
Apr Apr4g1554 Chr4 16972668 16976431 +
Arst Arst6g02923 Chr6 92920097 92929015 -
Bach Bach8g01395 Chr8 9559307 9563344 -
Bva Bva04g01904 Chr04 19403594 19408206 +
Car Car03g01781 Chr03 63709883 63713534 +
Cca Cca07g00754 Chr07 11720342 11724385 -
Dere Dere01g2058 Chr01 34571807 34577004 +
Dod Dod01g1857 Chr01 53292083 53296802 +
Enph Enph2g0622 Chr2 4807616 4813285 +
Glsi Glsi02g0492 Chr02 3169363 3172208 -
Gma Gma16g00447 Chr16 4789526 4793124 -
Gso Gso19g0879 Chr19 35008422 35012131 +
Gso Gso16g0406 Chr16 4669131 4673211 -
Lapu Lapu1g00511 Chr1 16632947 16637127 -
Lele Lele06g0453 Chr06 2770716 2775404 +
Lele Lele08g0466 Chr08 2845975 2850703 +
Lja Lja1g1691 Chr1 18640622 18644035 -
Mal Mal3g3069 Chr3 105682357 105685066 +
Mepo Mepo3g02436 Chr3 34350931 34353984 +
Mesa Mesa25g01749 Chr25 21125318 21127754 -
Mibi Mibi02g0713 Chr02 6864406 6869636 +
Mtr Mtr7g2268 Chr7 39079673 39082777 +
Phco Phco2g00937 Chr2 11778860 11782154 -
Prci Prci1g3679 Chr1 53303994 53309669 -
Psa Psa3g2179 Chr3 190791814 190794977 +
Pste Pste5g00875 Chr5 5609039 5612801 +
Pumo Pumo5g02131 Chr5 57932302 57936393 -
Rops Rops8g02383 Chr8 55204865 55208819 +
Seca Seca10g05021 Chr10 115559057 115562947 +
Ssu Ssu4g1858 Chr4 33945818 33950119 -
Sto Sto8g1630 Chr8 10469188 10485543 -
Tpr Tpr6g1030 Chr6 9505922 9509195 +
Trre Trre13g02050 Chr13 17751576 17754413 -
Tsu Tsu07g02860 Chr07 33727930 33743530 +
Vian Vian2g01472 Chr2 30571316 30574308 -
Vimu Vimu6g03680 Chr6 34675245 34678104 +
Vivi Vivi3g02246 Chr3 36959455 36962213 +
Pvu Pvu1g0886 Chr1 15275102 15277914 -
Acco Acco02g0795 Chr02 5594912 5598484 +
Accr Accr2g02915 Chr2 65016429 65019806 -
Adu Adu06g02255 Chr06 93780059 93786014 -
Aev Aev06g1769 Chr06 14137945 14138805 -
Ahy Ahy16g2379 Chr16 130356188 130364882 -
Ahy Ahy6g2041 Chr6 99342322 99348410 -
Aip Aip06g02691 Chr06 116763802 116781424 -
Alju Alju01g0798 Chr01 5899634 5904786 +
Amo Amo06g2488 Chr06 87355734 87364404 -
Arst Arst6g02925 Chr6 92994323 93000301 -
Bisa Bisa03g3527 Chr03 71218370 71221431 +
Car Car03g01780 Chr03 63695462 63700231 +
Cca Cca07g00755 Chr07 11739149 11748256 -
Dere Dere01g2056 Chr01 34512590 34520035 +
Dod Dod01g1853 Chr01 53271134 53274235 +
Enph Enph2g0620 Chr2 4786386 4789292 +
Glsi Glsi12g2106 Chr12 36098580 36100933 +
Gma Gma16g00448 Chr16 4802061 4805545 -
Gso Gso16g0407 Chr16 4681917 4685443 -
Lapu Lapu1g00512 Chr1 16649015 16651772 -
Lasa Lasa3g02275 Chr3 541684396 541687587 -
Lja Lja1g1692 Chr1 18652040 18655268 -
Mal Mal3g3068 Chr3 105665530 105670040 +
Mepo Mepo3g02435 Chr3 34337283 34341174 +
Mesa Mesa25g01753 Chr25 21196020 21199684 -
Mibi Mibi02g0709 Chr02 6839772 6843142 +
Mtr Mtr7g2267 Chr7 39068545 39072500 +
Phco Phco2g00938 Chr2 11793163 11799031 -
Prci Prci1g3684 Chr1 53334373 53337517 -
Pste Pste5g00874 Chr5 5587875 5591527 +
Pumo Pumo5g02133 Chr5 57954854 57957480 -
Rops Rops8g02382 Chr8 55159516 55162328 +
Seca Seca2g03358 Chr2 102893197 102896557 +
Ssu Ssu4g1859 Chr4 33965994 33968594 -
Sto Sto8g1631 Chr8 10490333 10493129 -
Tpr Tpr6g1027 Chr6 9471792 9476609 +
Trre Trre13g02052 Chr13 17769335 17770586 -
Tsu Tsu07g02859 Chr07 33714563 33718504 +
Vian Vian2g01473 Chr2 30587446 30590106 -
Vifa Vifa5g01864 Chr5 544635441 544639555 -
Vimu Vimu6g03679 Chr6 34641226 34644923 +
Vivi Vivi6g03287 Chr6 123674507 123677843 -
Pvu Pvu1g0887 Chr1 15321109 15321324 -
Pvu Pvu1g0888 Chr1 15362561 15364909 +
Phco Phco2g00941 Chr2 11834272 11836349 +
Vimu Vimu6g03676 Chr6 34606500 34614894 -
Pvu Pvu1g0889 Chr1 15366898 15368654 +
Phco Phco2g00942 Chr2 11839014 11839901 +
Vimu Vimu6g03675 Chr6 34601159 34602043 -
Pvu Pvu1g0890 Chr1 15369043 15371248 -
Glsi Glsi02g0492 Chr02 3169363 3172208 -
Gso Gso19g0879 Chr19 35008422 35012131 +
Lasa Lasa3g00631 Chr3 61772418 61774528 +
Psa Psa3g3858 Chr3 352684797 352689575 -
Vivi Vivi3g02246 Chr3 36959455 36962213 +