LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g2360	ATGGCGAACGAACTGCTGATTTTGTTTCTAGGAACAATACTGTTCCTGTGTGTGGAATCAAAGTACATAGCGTATAACACCTCGCAGGGCGTGGTGCCTGGGAAGCTCAACGTTCATCTCGTTGCTCATACACACGACGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGTGTTGGATTCTGTTGTTCAAGCTCTTTTGGCTGATAAGAATCGAAAGTTTATCTACGTTGAGCAAGCCTTTTTCCAGAGATGGTGGAGAGATCAGAGTGAGGCTGCTCAGGATAGTGTAAAGAAACTCGTTAGTTCGGGTCAACTAGAGTTCATAAATGGAGGCATGTGTATGCATGATGAAGCATCAACTCATTACATAGACATGATTGATCAGACTACACTTGGACATCGGTTTATTAAAGAGGAGTTTGGTGTGACTCCTAGAGTTGGTTGGCAAATCGATCCCTTTGGACATTCTGCTGTGCAGGCTTACTTATTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGATTACCAAGATAGGGCTAAGCGCAAAAGGGAGAAGAGTCTTGAGGTCATATGGCAGGGTAGTAAGAGCTTTGGCTCATCATCCCAGATCTTCGCAGGTGCTTTCCCTGAGAATTATGAGCCACCACCTGGTGGATTTTACTTTGAAGTTAATGATGTTTCACCAGTAATTCAAGATAATCTGGATTTGTTTGACTACAATGTTGAAGATCGAGTGAATGACTTTGTTACTGCTGCATTGTCACAGGCAAACATAACTCGAACAAATCATATAATGTGGACGATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGACAGCTTGACAAGTTTATTCATTATGTCAACAAGGATGGACGTGTCAATGCTTTGTACTCTACACCATCCATATATACGGATGCAAAATATGCTACAAATGAGACGTGGCCAATCAAGACTGATGATTACTTCCCTTATGCAGATAATGCAAATGCTTACTGGACTGGATACTTTACCAGTAGGCCAGCTATCAAGCGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGTGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTGGCAATTGCTCAACATCATGATGCTGTCACTGGCACAGAACAGCAGCATGTGGCAAATGATTATTCGAAACGATTGGCAATAGGCTACAAGGAGGCAGAGCAATTGGTTTCATCAACACTGGCATGCTTGGTTGAGTCAACATTGCCCGCTGGATGTCAGAACCCAGTTACAATGTTTCAACAATGTCCACTTTTGAATATAAGTTATTGTCCTGCATCAGAAGTTGATCTCAGTCATGGAAAGAATTTGGTTATTATTGTTTACAACTCTCTTGCTTGGAGGAGGAACGAAGTGATTCGAATTCCTGTTATTGATGACAATGTTGCGGTTCATGACTCTAATGGCACAGAAATAGAATCTCAACTTCTTCCTCAAGCTGAGGTCTTTGAAGGCTTAAGAAACTTTTATGTCAAGGCATATTTGGGACACACTCCACCCAACACACCCAAATATTGGCTTGCGTTCACAGTTTCAGTACCTCCACTTGGTTTTAGCACATACACTGTCTCAACTGCCAAAAGAACAGGTTCAACCAAATCATCAGTAAATACATATCAAAGTAATGAAAAGGCGAGGTTTGAAGTTGGTCAAGGGAACTTGAAACTTACATTCTCTACAGATGAAGAAACACACAGCAATTATGTTAATATAAGAAGCATGATGGACAAACAAGTTGAACAGAAGTACCTTTACTACTCAGGATATAATGGAAGTCATCAAAAGGATCCACAGAATTCTGGGGCATATATTTTTCGTCCAAATGGCACATATTTCATCAACCATGAAAGACAGGTTCCTTTTACTGTTTTGCATGGACCATTGCTTGATGAAGTGCATCAACAAATCAACCCATGGATATATCAGATTACCAGGCTACACAAAGAAAAGGAGCATGTTGAAGTAGAGTTTATTGTTGGCCCTATACCTATTGAAGATGGAACTGGTAAAGAAGTTGCCACTAAGATTTCAACTGCTTTAAGCAGCAAGAAAACATTTTACACAGATTCTAATGGTCGCGATTTTATCAAAAGGATACGTGACTTCAGAACAGACTGGGATCTGGAAGTGAACCAGCCCATTGCAGGAAATTATTACCCTATTAATCTAGGGATATATATAAAAGATAATAAGACAGAATTCTCAGTTTTGGTGGATAGATCTGTTGGAGGATCTAGCCTAGAAGATGGACAAATAGAACTGATGGTCCACAGGCGATTGCTACTTGATGATTCAAAAGGCGTTGCAGAGGCTCTAAATGAAACAGACTGCGTCGCTGATGATTGCAGGGGCCTAACTGTCCAAGGTAAATTTTACTACAGGATAGATCCCTTGGGTGAGGGTGCAAAGTGGCGCCGAACTTTTGGTCAGGAGATATATTCTCCTCTTCTATTAGCTTTCTCTGAAAAGGATGATAAAGATGATTGGATGAATTCCCATGTGCCAACATTTTCAGGAATGGATTCTTCATATACATTGCCTGATAACATTGCAATGATAACATTACAGGAACTTGATGATGGGGCAGTTTTGCTTCGGTTAGCACATCTATATGAGATTGGAGAAGATAAGGATCTCTCTGTAAAGACAAGTGTAGAGCTGAAAAAACTCTTCCCTGAAAAGAAGATCAAAGAGGTGAAAGAGATGAGCTTGTCAGCCAATCAAGAAAGGACAGAAATGGAGAAGAAAAGATTTGCATGGAAAGTAAAAGGGTCTTTTGGAGATGAACATGTTTTATCAAGGGGAGGGCCAGTTGATCAAAAAGAGCTAGCTGTGGAGCTTGCTCCCATGGAGATCCGCACTTTTATCATTTACTTTGATGACAATGACATGCCTAACCTTCTCTCAGATGCATAG	3063	0.4065	MANELLILFLGTILFLCVESKYIAYNTSQGVVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVVQALLADKNRKFIYVEQAFFQRWWRDQSEAAQDSVKKLVSSGQLEFINGGMCMHDEASTHYIDMIDQTTLGHRFIKEEFGVTPRVGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKREKSLEVIWQGSKSFGSSSQIFAGAFPENYEPPPGGFYFEVNDVSPVIQDNLDLFDYNVEDRVNDFVTAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKFIHYVNKDGRVNALYSTPSIYTDAKYATNETWPIKTDDYFPYADNANAYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFSGRMNSGPNTDSLADALAIAQHHDAVTGTEQQHVANDYSKRLAIGYKEAEQLVSSTLACLVESTLPAGCQNPVTMFQQCPLLNISYCPASEVDLSHGKNLVIIVYNSLAWRRNEVIRIPVIDDNVAVHDSNGTEIESQLLPQAEVFEGLRNFYVKAYLGHTPPNTPKYWLAFTVSVPPLGFSTYTVSTAKRTGSTKSSVNTYQSNEKARFEVGQGNLKLTFSTDEETHSNYVNIRSMMDKQVEQKYLYYSGYNGSHQKDPQNSGAYIFRPNGTYFINHERQVPFTVLHGPLLDEVHQQINPWIYQITRLHKEKEHVEVEFIVGPIPIEDGTGKEVATKISTALSSKKTFYTDSNGRDFIKRIRDFRTDWDLEVNQPIAGNYYPINLGIYIKDNKTEFSVLVDRSVGGSSLEDGQIELMVHRRLLLDDSKGVAEALNETDCVADDCRGLTVQGKFYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNSHVPTFSGMDSSYTLPDNIAMITLQELDDGAVLLRLAHLYEIGEDKDLSVKTSVELKKLFPEKKIKEVKEMSLSANQERTEMEKKRFAWKVKGSFGDEHVLSRGGPVDQKELAVELAPMEIRTFIIYFDDNDMPNLLSDA*	1021

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g2360	1020	Pfam	Glycosyl hydrolases family 38 N-terminal domain	37	349	IPR000602	GO:0004559\|GO:0006013
	Ahy16g2360	1020	Gene3D	Glycoside hydrolase family 38, central domain	397	451	IPR037094	GO:0004559\|GO:0006013
	Ahy16g2360	1020	PANTHER	ALPHA-MANNOSIDASE	13	1010	-	-
	Ahy16g2360	1020	Gene3D	Glycoside hydrolase family 38, central domain	318	396	IPR037094	GO:0004559\|GO:0006013
	Ahy16g2360	1020	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	353	447	IPR028995	-
	Ahy16g2360	1020	CDD	GH38N_AMII_LAM_like	36	313	-	-
	Ahy16g2360	1020	Pfam	Glycosyl hydrolases family 38 C-terminal domain	601	814	IPR011682	GO:0004559\|GO:0006013
	Ahy16g2360	1020	Gene3D	Glycoside hydrolase 38, N terminal domain	36	317	IPR027291	-
	Ahy16g2360	1020	SMART	Alpha_mann_mid_2	354	428	IPR015341	GO:0004559\|GO:0006013
	Ahy16g2360	1020	Pfam	Alpha mannosidase middle domain	354	446	IPR015341	GO:0004559\|GO:0006013
	Ahy16g2360	1020	Gene3D	-	599	863	-	-
	Ahy16g2360	1020	SUPERFAMILY	Galactose mutarotase-like	457	1008	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Ahy16g2360	1020	SUPERFAMILY	Glycoside hydrolase/deacetylase	25	350	IPR011330	GO:0005975
	Ahy16g2360	1020	Coils	Coil	945	965	-	-
	Ahy16g2360	1020	Gene3D	-	884	1012	-	-
	Ahy16g2360	1020	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	898	1005	IPR041147	-
	Ahy16g2360	1020	Gene3D	-	474	598	IPR013780	-
	Ahy16g2360	1020	PANTHER	ALPHA-MANNOSIDASE	13	1010	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g2360	Ahy-Chr16	129867436	129892185	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g2360	6	921	Glycoside Hydrolase	AT5G13980	71.939	0.0	1402

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g2360	K01191		-	gmx:100776282	1733

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g2360	16	129867436	129892185	Ahy16g2360	16	129867436	129892185	ECH