Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00256 ATGCTCGATGCGGCAATGGTATTCGCCGTTTTGGTGGCGGCGATTTGGGTTGGGGAATCAGAGTACATAGAGTACAATACGACGCAGAGGATAGTCCCAGACAAAATAAACGTGCACATGGTACCTCACTCCCACGACGATGTTGGCTGGCTCAAGACCGTCGACCAGTACTTCGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTGCAGAATGTGCTGGATTCTGTGATATCCTCTCTCTTGGAGGACAAGAATCGCAAGTTCATATATGTTGAAATGGCCTTTTTCCAAAGATGGTGGAGACAGCAAAGTAAAGCAATGAAAATTAAAGTCAAGGAGCTTGTCAATGCGGGTCAGTTGGAATTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACCCCACATTACATTGATCTAATTGATCAGACCACTCTCGGGCATCAATTTATCAAAGATGAATTTGGTAAGGTTCCAAGAGTTGGTTGGCAGATTGACCCATTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGTGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTGAAAGAGAAGACTCTTGAGGTTATTTGGCAGGGTTCCAAGTCTCTTGGCTCTTCTTCACAAATATTTACTGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACTTTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATGCTACTATTTGACTATAATGTTCAAGAAAGGGTCAACGATTTTGTGTATGCTGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATTATGTGGACAATGGGGACAGACTTCCGGTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGACGTGTCAATGCATTATACTCCGCACCATCTATCTACACTGATGCAAAATATGCAGCTAATGAATATTGGCCTCTTAAAGTTGATGATTTCTTCCCGTACGCAGATCACCCAAATGCATATTGGACTGGATATTTCACAAGTAGGCCTGGTTTGAAGGGCTATGTGAGAGTGATGAGTGCTTACTATCAGGCAGCAAGGCAATTGGAATATTTTAAAGGGAGGAATGAAACCGGACCGAATACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTTAGTGGCACAGAAAGGCAGCATGTAGCTTCTGATTATGCACTGCGACTCTCATTGGGATATGAAGAGGCAGAAAGATCGGTTGCATCTGCACTTGCTTCCTTGGTAAATCAAAGATTAAGTTTGCATGGGGTGAACCTAGCGACAGACTTCCAGCAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCGTCAGAAACTACATTGGTTGATGGAAAGAGCTTGGTGATTGTTGTGTATAATCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTAAGTTCTTTTACTGGTAATTTGTTTATTTTATTTCTTGTTGGAGTTTGGTATGCGCTGTACAAAATGTATTCCATCACTTCAAAATCAACTGTTGCTGCCCTGTTCCATTTACCTGTTGATAGGGTTTCCACTGCACATGTTTTTGTTCGGGATTTGGCTGGGAATAAAATTGAGTCTCAGCTTCTGCCCCTGTCTAATGCTACTTTGACTATGAGAAGACATTATGTCAGAGCATATAAAGGAAAAGCTCCTGGGAGTGACGTACTCAAGTATTGGCTTGCATTTCCAGTGTCTGTTCTTCCCCTTGGTTTCAGCACCTATAAAGTGACAAGCTGTGATCAGTCATGTCATAGTTCAACTATCTCAAAGATGTACAGACCAGAAGGAAGCACTGATAAAAGCATAAAAGTTGGACAAGGGAATCTTATGCTACTTTATTCAGCAGATGAAGGAAAACTGACTCACTATGTTAACAGTAGAACCCTGGTTACTGCATCAGTTGCACAATCATACAGTTATTATTCTGGAAACGACGGGACTGATAAAGATCCCCAGAGAGCACAGAAATCACACATTGTTTCACCTAGCAGCACCAAAAAATGTCCGATTTGCTCCAAAATAGCAACAAAACCAAAGAAAGAGCCCAAAAATGACTGGGCTTTCTTCAGATCAGGGAGATGCTCCACTCTGTTACCAAAATGA 2217 0.4217 MLDAAMVFAVLVAAIWVGESEYIEYNTTQRIVPDKINVHMVPHSHDDVGWLKTVDQYFVGANNSIRGACVQNVLDSVISSLLEDKNRKFIYVEMAFFQRWWRQQSKAMKIKVKELVNAGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKDEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVIWQGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDMLLFDYNVQERVNDFVYAALAQANVTKTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSAPSIYTDAKYAANEYWPLKVDDFFPYADHPNAYWTGYFTSRPGLKGYVRVMSAYYQAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSLGYEEAERSVASALASLVNQRLSLHGVNLATDFQQCPLLNISYCPPSETTLVDGKSLVIVVYNPLAWKREDVIRIPVSSFTGNLFILFLVGVWYALYKMYSITSKSTVAALFHLPVDRVSTAHVFVRDLAGNKIESQLLPLSNATLTMRRHYVRAYKGKAPGSDVLKYWLAFPVSVLPLGFSTYKVTSCDQSCHSSTISKMYRPEGSTDKSIKVGQGNLMLLYSADEGKLTHYVNSRTLVTASVAQSYSYYSGNDGTDKDPQRAQKSHIVSPSSTKKCPICSKIATKPKKEPKNDWAFFRSGRCSTLLPK 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00256 738 PANTHER ALPHA-MANNOSIDASE 9 507 - -
Spst1g00256 738 Gene3D Glycoside hydrolase family 38, central domain 396 451 IPR037094 GO:0004559|GO:0006013
Spst1g00256 738 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
Spst1g00256 738 SUPERFAMILY Families 57/38 glycoside transferase middle domain 352 447 IPR028995 -
Spst1g00256 738 Gene3D - 463 514 IPR013780 -
Spst1g00256 738 FunFam Alpha-mannosidase 36 316 - -
Spst1g00256 738 FunFam Alpha-mannosidase 396 451 - -
Spst1g00256 738 SUPERFAMILY Glycoside hydrolase/deacetylase 25 351 IPR011330 GO:0005975
Spst1g00256 738 Gene3D Glycoside hydrolase family 38, central domain 317 395 IPR037094 GO:0004559|GO:0006013
Spst1g00256 738 SUPERFAMILY Galactose mutarotase-like 452 687 IPR011013 GO:0003824|GO:0005975|GO:0030246
Spst1g00256 738 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Spst1g00256 738 Pfam Alpha mannosidase middle domain 353 445 IPR015341 GO:0004559|GO:0006013
Spst1g00256 738 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
Spst1g00256 738 CDD GH38N_AMII_LAM_like 36 312 - -
Spst1g00256 738 Gene3D - 535 637 IPR013780 -
Spst1g00256 738 FunFam Alpha-mannosidase 315 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00256 Spst-Chr1 3543303 3551009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00256 10 711 Glycoside Hydrolase AT3G26720 67.472 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00256 K01191 - gmx:100795651 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00256 1 3543303 3551009 Spst1g00256 1 3543303 3551009 ECH