Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00505 ATGAGTGCTTACTATCAGGCAGCAAGGCAGTTGGAATATTTTAAAGGGAGGAATGAAACAGGACCAAATACTGATGCATTAGCTGATGCTCTAGCAATTGCGCAGCACCATGATGCAGTTAGTGGCACTGAAAGGCAGCATGTTGCTTCTGATTATGCATTGCGACTCTCATTGGGATATGAAGAGGCAGAAAGGTTGGTTGCATCTGCACTTGCTTCCTTGGTAAATCAAAGATTAAATTCACATGGGGTGAACCTAGTGACAGACTTCCAGCAGGCAATGCACTACAGCCATAGCATAAAAACTACATTGGTTAATGGAAAGAGCTTGGTGATTGTTGTTTATAACCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTTTCCACTGTACATGTTTTTGTTCAGGATTTGGATGGGAAGAAAATTGAGTCTCAGCTTCTGCCTCTGTCTAATGCTACTTTGACCATGAGAAAACATTATGTCAGAGCATATAGAGGAATAGCTCCTGGGACTGACATACTCAAGTATTGGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAGCATCTATATAGTAACAAGCTCTGATCAGTCAGATCATAGTTCAACTCTCTCAAAGATGTCAAGTCCAGAAGGAAGTACTAATAAAAGCATAGAAGTTGGACAAGGGAATCTAATGCTACTTTATTCAGCAGATGAAGGAAAACTGACTCACTATGTTAACAGTAGAACCCAGGTTACGGCATCAGTTGAACAATCATACTGTTATTATTCTGGAAACGATGGGACTGATAAGGATCTCCAGGCTTCAGGGGCATATGTCTTCCGTCCAAATGGCTCGTTTCCCATTAAATCAGATCATCAGATTACGAGGATATTCAAGGCAAAAGAACATGCTGAAATTGAGTTCACAGTTGGGCCTATACCAGTGGATGATGGCATTGGGAAAGAAATTATTACTCAATTTAAAACTACAATGAAGACCAACAAGACATTCTACACCGATTCTAATGGACGTGACTTCATTAAGAGGATTCTAGATTTCAGGACAGATTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTACCCAGTTAATTTAGGAATATATATTCAAGATAGTAGTGTGGAGTTCTCAGTGTTGGTGGACCGCTCAGTTGGAGGTTCCAGCTTGGAAGATGGACAAATGGAGCTGATGCTCCATAGGAGGTTACTTCATGATGATGCAAGAGGTGTAGGTGAGGTACTCAATGAAACAGTTTGCATTGCCGATAAGTGTGAGGGTTTAACGATTCAAGGAAAACTTTACCTTAGAATAGACCATAAAGGTGAAGGTGCCAAGTGGCGTCGCACAGTTGGGCAGGAGTTATATTCGCCACTGTTGTTGGCCTTCACAGAACAGGATGGGGATAATTGGTTACATTTCGCTGCATCAACATTTTCAGGCACAGATTCTTCCTACAGTTTACCCAACAACATTGCTCTTTTAACCCTCCAGGAATTTAAAGATGGAAAAGTACTCGTAAGATTGGCTCACCTTTATGAGATTGGAGAGGACAGTAATTACTCAGTTATGGCAAGTGTGGAATTGAAAAAGTTGTTTCCTAACAAGAAGATAAATAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAGGAAATTAGATTGGAAGGTAGAAGGTTCCACTGAAGAACCTAAGGTGGTAAGGGGAGGACCTGTTGATCCCACAAGCTTGGTGGTTGAACTTGCTCCAATGGAGATCCGGACATTCTTCATTGACTTTAATCCCCTCCGAACACATCTAATGGCGAAAAAATTGCTCTTTTTGTTGACCCTTTTGGAGATACTACTCTTTGGGCAATCCAAGTTTATGGTCTACAACACATCCCAGGGTATAGTCCCAGGCAAACTCAATGTTCATCTGGTAGCTCATACCCATGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCAATCCAGGGGGCTTGTGTGCAAAATGTCTTGGACTCTATGGTGCATGCGCTGTTGGCTGACAAGAACAGAAAGTTTATCTATGTTGAGATGGCATTTTTCAAGCGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGATGTTGTTAAGAAACTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGTGCCATGTCTATGCATGATGAGGCAGTTACTCATTACATAGACATGATTGATCAGACTGCACTTGGACATCAGTTTCTTAAAGAAGAATTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCTTTTGGACATTCTGCTGTTCAGGCTTACCTGTTGGGAGCTGAAATATTTGCTGGAGCATTCCCTGAAAATTATGAGCCACCTGCAGGATTTTACTTTGAAGTTAATGATAACTCACCAATAGTTCAAGATAACGTGGAATTGTTTGATTACAATGTCCAAGAACGAGTGAATGACTTTGTTGCAGCTGCATTATCACAGGCAAACATAACTCGAACAAATCATATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGGCAGCTGGACAAACTCATTCATTATGTAAACAAGGATGGACGTGTCAATGCCCTGTACTCTACACCATCCATATACACTGATGCAAAATATGCTACAAATGAGTACTGGCCAATCAAGACTGATGACTTCTTCCCTTATGCAGATCGAGCAAATGGTTACTGGACAGGATACTTTACCAGTAGACCAGCTATCAAACGCTATGTCAGATTAATGAGTGGTTATTACTTGGCTGCACGACAACTAGAGTTTTTTAGGGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAACATCATGATGCAGTCACTGGTACAGAAAAGCAGCATGTGGCCAATGATTACTCTAAACGATTGGCAATAGGCTACAAGGAGGCAGAGGAATTGGTTTCATCATCGCTGGCTTGCTTGGTTGAGTCACCATTGCTTTCTAGATGCCAAAACCCAGTTACGAAGTTTCAACAATGCCCACTTTTGAACATAAGTTATTGTCCTGCATCAGAAGTTGATTTGGTTCAAGGGAAGAATTTGGTCATTTTGGTTTACAACTCTCTTGGTTGGAGGAGGGATGAAGTGATTCGATTTCCGGTTACTGAGGCCAATGTTAGAGTTCAGGACTCTAATGGTATAGAAATAGAATCTCAACTTCTTCCTCAGGCTGGGAAATATCTAGACTTGAGAAACTACTATGTGAAGGCATATGTGGGACAAGCTCCACCCAAGGCACCCAAGTATTGGCTTGCATTTAAAGTTTCTGTACCACCACTTGGTTTTAGCACCTACACTGTCTTGACTGCCAAACGAACAGGATCCACTAGATCATCAGTAGCTACATATAAAAGTAGTGAAAAGTCTAAATTTGAAGTTGGTCAAGGAAATTTGAAGCTTAAATTTTCTACTGATCAAGAGAAGCGTACCAATTATGTTAATATAAGAAACCTGGTTGAGGAACAGGTTGAACTAAGTTACCTTTACTATTCTGGATACAACGGAACCAATCAAAAGGATCCACAGAATTCTGGGGCCTATATCTTCCGACCAAATGGCACATATCCAATCAACCATGATAAAAAGGTTCCATTGACTGTTTTAAATGGACCGGTACTAGATGAAGTTCATCAACAAATCAATCCATGGATATATCAGATTACCAGACTATACAAAGGAAAAGAGCATGTTGAAGTGGAGTTTATTATACAATCTGTCTGTGACAGTCTGGTTGGCCCTATACCGATTGAAGATGGAACCGGTAAAGAAGTTGCCACTCAGATTTCAACTACTATGGAAACCAACAAAACATTTTACACTGATTCTAACGGACGTGATTTTATCAGAAGAATACGTGATTACAGAACTGACTGGGACCTGGAAGTGAACCAACCCGCTGCTGGAAATTATTACCCTATTAATCTTGGGATATACATGGAGGATAATAAAACAGAATTCTCAGTTTTGGTGGACAGACCTATTGGAGGATCCAGCTTACAAGATGGACAAATAGAACTGATGGTCCACAGGAGATTACTACTTGATGATTCAAGAGGTGTTGCAGAGGCTCTAAATGAAACAGATTGTGTTCGTGATGATTGCAGGGGTCTAACTGTCCAAGGTAAATATTACTACAGAATAGACCCCTTGGGTGAGGGTGCTAAGTGGCGGCGTAGTTTTGGCCAGGAAATATATTCTCCTCTTCTGTTAGCCTTTGCTGAAAAGGTATTAAAGGTCTATTTCATTGTGCAGGATGATAAAGATGAGTGGATGAATTCCCGTGTGTTGACATTTTCAGGAATGGATTCTTCTTACGCATTACCTGATAATGTCGCTATTATAACTTTACAGGAACTTGAAGATGGGAAGGTTCTCCTTCGCTTAGCACATCTATACGAGATTGAAGAAGACAAGGATCTCTCCGTACTGGCAACTGTGGAGCTGAAAAAGCTCTTCCCTGGGAGGAAAATCAAAGAGGTAAAGGAGATGAACTTATCTGCCAATCAAGAAAGAACAGAGATGGAGAAAAAAAGACTTCATTGGAAAGTAGAAGGCTCTTCTGGAAATAGACATGTTTCAAGGGGAGGACCAGTTGATCCAAAAGTGCTAAACGTGGAGCTTTCCCCAATGGAAATTCGCACTTTTATCGTTTCTTTTGATGGTGTGTCAGACCAACCTTTTTATGCAATGTAG 4830 0.4085 MSAYYQAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSLGYEEAERLVASALASLVNQRLNSHGVNLVTDFQQAMHYSHSIKTTLVNGKSLVIVVYNPLAWKREDVIRIPVSTVHVFVQDLDGKKIESQLLPLSNATLTMRKHYVRAYRGIAPGTDILKYWLAFPVSVPPLGFSIYIVTSSDQSDHSSTLSKMSSPEGSTNKSIEVGQGNLMLLYSADEGKLTHYVNSRTQVTASVEQSYCYYSGNDGTDKDLQASGAYVFRPNGSFPIKSDHQITRIFKAKEHAEIEFTVGPIPVDDGIGKEIITQFKTTMKTNKTFYTDSNGRDFIKRILDFRTDWDLQVNQPIAGNYYPVNLGIYIQDSSVEFSVLVDRSVGGSSLEDGQMELMLHRRLLHDDARGVGEVLNETVCIADKCEGLTIQGKLYLRIDHKGEGAKWRRTVGQELYSPLLLAFTEQDGDNWLHFAASTFSGTDSSYSLPNNIALLTLQEFKDGKVLVRLAHLYEIGEDSNYSVMASVELKKLFPNKKINKVTEMSLSANQERAEMEKRKLDWKVEGSTEEPKVVRGGPVDPTSLVVELAPMEIRTFFIDFNPLRTHLMAKKLLFLLTLLEILLFGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFKRWWRDQSEAVQDVVKKLVSSGQLEFINGAMSMHDEAVTHYIDMIDQTALGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEIFAGAFPENYEPPAGFYFEVNDNSPIVQDNVELFDYNVQERVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYATNEYWPIKTDDFFPYADRANGYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLAIGYKEAEELVSSSLACLVESPLLSRCQNPVTKFQQCPLLNISYCPASEVDLVQGKNLVILVYNSLGWRRDEVIRFPVTEANVRVQDSNGIEIESQLLPQAGKYLDLRNYYVKAYVGQAPPKAPKYWLAFKVSVPPLGFSTYTVLTAKRTGSTRSSVATYKSSEKSKFEVGQGNLKLKFSTDQEKRTNYVNIRNLVEEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTYPINHDKKVPLTVLNGPVLDEVHQQINPWIYQITRLYKGKEHVEVEFIIQSVCDSLVGPIPIEDGTGKEVATQISTTMETNKTFYTDSNGRDFIRRIRDYRTDWDLEVNQPAAGNYYPINLGIYMEDNKTEFSVLVDRPIGGSSLQDGQIELMVHRRLLLDDSRGVAEALNETDCVRDDCRGLTVQGKYYYRIDPLGEGAKWRRSFGQEIYSPLLLAFAEKVLKVYFIVQDDKDEWMNSRVLTFSGMDSSYALPDNVAIITLQELEDGKVLLRLAHLYEIEEDKDLSVLATVELKKLFPGRKIKEVKEMNLSANQERTEMEKKRLHWKVEGSSGNRHVSRGGPVDPKVLNVELSPMEIRTFIVSFDGVSDQPFYAM* 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00505 1609 SUPERFAMILY Glycoside hydrolase/deacetylase 640 924 IPR011330 GO:0005975
Lapu1g00505 1609 Gene3D - 485 610 - -
Lapu1g00505 1609 Gene3D - 1475 1601 - -
Lapu1g00505 1609 FunFam Alpha-mannosidase 971 1025 - -
Lapu1g00505 1609 SMART Alpha_mann_mid_2 928 1002 IPR015341 GO:0004559|GO:0006013
Lapu1g00505 1609 SMART Alpha_mann_mid_2 2 56 IPR015341 GO:0004559|GO:0006013
Lapu1g00505 1609 Gene3D - 1048 1170 IPR013780 -
Lapu1g00505 1609 Gene3D - 88 224 IPR013780 -
Lapu1g00505 1609 Coils Coil 1536 1556 - -
Lapu1g00505 1609 Gene3D Glycoside hydrolase 38, N terminal domain 625 798 IPR027291 -
Lapu1g00505 1609 FunFam Alpha-mannosidase 890 970 - -
Lapu1g00505 1609 SUPERFAMILY Galactose mutarotase-like 1027 1598 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu1g00505 1609 CDD GH38N_AMII_LAM_like 651 887 - -
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 499 605 IPR041147 -
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 1489 1595 IPR041147 -
Lapu1g00505 1609 FunFam Alpha-mannosidase 1171 1445 - -
Lapu1g00505 1609 Pfam Alpha mannosidase middle domain 2 74 IPR015341 GO:0004559|GO:0006013
Lapu1g00505 1609 Pfam Alpha mannosidase middle domain 929 1020 IPR015341 GO:0004559|GO:0006013
Lapu1g00505 1609 FunFam Alpha-mannosidase 1475 1600 - -
Lapu1g00505 1609 Gene3D - 225 291 - -
Lapu1g00505 1609 Gene3D - 1171 1445 - -
Lapu1g00505 1609 Gene3D - 292 465 - -
Lapu1g00505 1609 Gene3D Glycoside hydrolase family 38, central domain 892 970 IPR037094 GO:0004559|GO:0006013
Lapu1g00505 1609 PANTHER ALPHA-MANNOSIDASE 796 1598 - -
Lapu1g00505 1609 Gene3D Glycoside hydrolase family 38, central domain 23 80 IPR037094 GO:0004559|GO:0006013
Lapu1g00505 1609 Gene3D Glycoside hydrolase family 38, central domain 971 1024 IPR037094 GO:0004559|GO:0006013
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 C-terminal domain 292 417 IPR011682 GO:0004559|GO:0006013
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 C-terminal domain 1176 1397 IPR011682 GO:0004559|GO:0006013
Lapu1g00505 1609 FunFam Alpha-mannosidase 99 224 - -
Lapu1g00505 1609 FunFam Alpha-mannosidase 24 80 - -
Lapu1g00505 1609 SUPERFAMILY Families 57/38 glycoside transferase middle domain 927 1021 IPR028995 -
Lapu1g00505 1609 SUPERFAMILY Families 57/38 glycoside transferase middle domain 2 78 IPR028995 -
Lapu1g00505 1609 SUPERFAMILY Galactose mutarotase-like 91 608 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 N-terminal domain 796 923 IPR000602 GO:0004559|GO:0006013
Lapu1g00505 1609 Pfam Glycosyl hydrolases family 38 N-terminal domain 652 794 IPR000602 GO:0004559|GO:0006013
Lapu1g00505 1609 Gene3D Glycoside hydrolase 38, N terminal domain 799 891 IPR027291 -
Lapu1g00505 1609 FunFam Alpha-mannosidase 1048 1172 - -
Lapu1g00505 1609 FunFam Alpha-mannosidase 485 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00505 Lapu-Chr1 16502511 16567117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00505 1 522 Glycoside Hydrolase AT5G13980 56.475 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00505 K01191 - gmx:100776282 1807.34