Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01788 ATGATGGCCAATACGGCACTGCTGTTCGTCGTTTTGGTGGCGGCGATTTGTGCAGCGAAATCAGAGTACATAGATTACAACACCACACATAGAATCGTCCCTCACAAAATTAACGTGCACTTAGTTCCTCACTCACACGATGATGTTGGATGGCTTAAGACCGTTGATCAGTACTACGTTGGAGCCAACAACTCTATTCGGGGTGCATGTGTGCAGAATGTGCTTGATTCTGTGATATCCGCTCTCTTGGAGGATCAAAATCGCAAGTTTATCTATGTTGAAATGGCATTTTTCCAGAGATGGTGGAGGCAGCAAAGTAAAGCTAAGAAACTTAAAGTCAAAGAGCTTGTCAACTCGGGTCAGCTGGAATTCATAAATGGTGGTATGTGCATGCATGATGAGGCAACCCCGCATTACATTGACCTGATTGATCAGACCACGCTTGGGCATCAATTCATCAAAGATGAATTTGGCAAGATTCCAAGAGTTGGCTGGCAGATTGATCCGTTTGGCCATTCCGCAGTTCAGGCTTACTTGCTTGGAGCTGAGCTAGGATTCGATTCACTCTTTTTTGCCAGAATTGATTACCAAGATAGAGCCAAACGATTAAAGGAGAGGACGCTAGAGGTTGTTTGGCAGGGTTCCAGGTCTCTTGGTTCTTCTTCACAAATATTTACTGGGATATCTCCCAGGCACTATGATCCTCCCGATGGTTTCACGTTTGAGATAAATGATGTTTCCCCTCCTATTCAGGACGACATTCTACTGTTTGATTATAATGTTGAAGAAAGAGTCGATGACTTCGTATCTGCTGCCTTAGCTCAGGCTAACGTGACCAGGACGAATCACATAATGTGGATGATGGGGACAGACTTCCGTTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGTCGAGTCAATGCACTGTATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTAATGAGCAATGGCCTCTTAAAATTGATGATTTCTTCCCGTATGCTGATCATCCAAATGCATATTGGACTGGTTATTTTACAAGTAGACCAGCTTTAAAGGGTTATGTGAGAATGATGAGCGGTTACTATCAGGCGGCAAGGCAATTGGAATTTTTTAAAGGGAGGAATGAATCAGGACTAAATACCGATGCATTAGCTGATGCTTTAGCACTTTCTCAACACCATGATGCTGTTAGTGGTACAGAAAGACAGCATGTTGCTGCTGATTATGCAAAGCGGATCTCAATAGGCTATGCTGAGGCAGAAGGGTTGGTTGCATCTGCACTTGCTTCATTGGTAAACCAAAGATTAAGTTCAAATGTGATAAACCCGGTGAAAGGCTTCCAGCAGTGCCCTCTCCTTAATATAAGCTACTGTCCTCCGTCAGAAGCTACCTTGGCGAATGGGAAAAGTGTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAGGAAGTAATTCGAATTCCTGTTTCCACTGGAGAGGTTTTTGTCCAGGACTCTGCTGGGAAGGAAATTGAGTCTCAGCTTCTGCCTCTATCTAATATTACTTTTAGCATAAGAAAAAAATATGCCAAAGCATATATTGGAACAGCCCCTTCTGGGGAACCCAAGTATTGGCTTGCATTTCCAGTATCTGTACCTCCCATTGGTTTCAGCACGTATATGGTATCAAGGCCTAAACAGAGAGGTCGTATTTCAACTATGTCAAAGGAGTTTAGATCAGACGGAAGTACTAATAATAGCATAGAAGTTGGACAAGGAAATTTAAAGCTACTTTATTCTGCAGATGAAGGAAAATTGACTCAATATGTTAACAGTAGAAATCTAGTTGCAGCATCAGTTGAACAATCATACAGTTTTTACTCTGGATATGTCGGGGATGGTAAAGATACTCAGGCTTCCGGGGCATACATCTTCCGTCCAAATGGCTCGTTTCCCATTAAATCTGATCACCAGGTATCATTTACTGTCTTGCGTGGTCCGATATTGGATGAAGTACATCAGCAACTCAATCCATGGGTATCTCAGATTCTGAGGATATATAAGGCAAAGGAGCATGCTGAAGTTGAGTTCACAATTGGGCCTATACCTGTGGACGATGGCATTGGGAAAGAAGTTATTACTCAATTTTCAACTACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGACGCGACTTCATCAAAAGGATTCGAGATTTCAGGTCTGACTGGGATCTAGAAGTGAACCAACCCATAGCTGGAAACTATTACCCAGTTAATTTAGGAATATATTTGCAAGATAGCACTATGGAACTCTCGGTCTTGGTGGACCGCTCAGTTGGTGGTTCCAGTTTGGTAGATGGCCAAGTAGAGCTTATGCTCCACAGGAGGTTGCTTCATGACGATGCAAGAGGTGTTGGAGAGGTACTTAATGAAACTGTTTGCATTGCTGATAAATGTGAAGGCTTAACAATTCAAGGAAAACTGTACCTTAGAGTTGACCATAAAGGTGAAGGTGCTAAATGGCGTCGTACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAGCAGGATGGGGATAATTGGTTGCATTTTCAACAACCAACATTTTCTGGCATAGATTCTTCCTACAGTTTACCAAACAACACTGCACTACTAACTCTGCAGGATTTTGGAAATGGAAAAGTACTCCTAAGGCTAGCTCATCTTTATGAGGTTGGAGAGGACAAAGATTGTTCGGTAACCGCAAATGTAGAATTGAAAAAGCTTTTCCCTAACAAGAAGATAAGTAAAGTTACAGAGATGAGTTTGTCTGCAAATCAAGAAAGAGATGAAATGGAAAAGAAGAAACTAGTTTGGAAGGTAGAAGAAGGCTTCAATGAAGAATCAAAGGTGGTGAGAGGAGGACCTGTTGATCCTACAAAGCTTGTTGTTGAACTTGCTCCAATGGAGATTCGGACATTCTTTGTTGACTTTAATCCCCTCCAAACAGTTCCTGCAGCAGAAATTCGTGTAGCGATCAGCACTGTGCATGATCACCAAGTGGAAGTTCCCTTCTTTCATTTTATCAGACTAATTAATAAAAAGGGAATAGTCTCTGGGAAGCTCAATGTTCATCTTGTTGCTCATACCCACGATGATGTTGGGTGGTTGAAAACTGTTGATCAGTACTATGTTGGTTCCAACAATTCTATTCAGGGGGCTTGTGTTCAAAATGTGTTGGATTCCATGGTTCATGCTCTATTGGCTGATAAGAACAGAAAGTTTATCTATGTGGAAATGGCCTTTTTCCAGAGATGGTGGAGAGATCAGAGTGAAGCTGTTCAGGATGTAGTTAAGAAGCTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGGGGCATGTGTATGCACGATGAGGCAGTAACTCACTACATAGACATGATTGATCAGACTACACTCGGACATCGATTTCTGAAAGAGGAGTTCGGTGTGACTCCCAGAGTTGGTTGGCAAATTGATCCCTTTGGACATTCCGCTGTTCAGGCTTACTTATTGGGAGCTGAAGTTGGCTTTGATTCACTTTTCTTTGGTAGGATAGATTACCAAGATAGGACTAAACGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCATCTTCTCAAATCTTTGCTGGTGCATTCCCTGAGAACTACGAACCTCCTTCTGGATTTTACTTTGAAGTTAATGATGATTCAGCAATAGTTCAAGATAACATGGATTTGTTTGATTACAATGTGCAAGATAGAGTGAATGACTTTGTTGCTGCTGCATTGTCACAAGCAAACATAACTCGAACAAATCATGTCATGTGGACAATGGGTACTGATTTTAAGTATCAATACGCACATACATGGTACCGGCAGTTGGACAAGCTTATTCATTATGTCAACAAGGATGGACGTGTCAATGCTCTGTACTCTACGCCATCCATATATACTGATGCAAAATATGCTGCAAATGAGTCCTGGCCAATCAAGACTCACGATTTTTTCCCTTATGCAGATCGTGCAAACGGTTACTGGACAGGATACTTTACCAGTAGGCCAGCTTTGAAACGCTATGTCAGATTAATGAGTGGTTATTATGTGGCTGCTAGACAACTAGAATATTTTAGAGGGAGAACGAACCCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCGATTGCTCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCTAATGATTATTCTAAACGATTGGCGATAGGCTACAAGGAGGCAGAGGAACTAGTTTCATCATCACTGGCTTGCTTGGTTGAATCAACATCTTTTACTGGATGTCAGAACACAGTTACAAAGTTTCGACAATGTCCGCTTTTGAACATAACTTATTGTCCTGCAACAGAAGTTGAACTGGTTCAAGGAAAGAGTTTGGTTATTGTGGTTTATAACTCACTTGGTTGGTGGAGGAATGAAGTGATTCGAATTCCTGTTATTGATGACAAAATTACAGTTCATGACTCTAACGGTGTAGAAATAGAATCTCAAATTCTACCTCTTGCTGAGGTATATGTAGACTTGAGAAACTATTATGTCAAGGCATATTTGGGACAAAATCCAGTCAAAACACCCAAGTATTGGCTTGCATTTGAAGTTTCTGTACCACCTTTTGGTTTTAGCACCTACACTGTCTTGACCGCCAAAAAAACAGGTTCCACCAGATCATCAGTATATACACATCAAATTCATGACAAATCTAGATTTGAAGTTGGTCAAGGAAATCTGAAGCTTAAGTTTTCTACAGATCTTGAAAAGCGTACTGATTATGTTAATGCAAGAAACTTGGTTGAGGAACAGGTTGAACTAAGTTACCTTTACTATTCAGGATTTAACGGAACTGATCAAAAAGATCCGCAGAATGCTGGCGCCTATATCTTCCGTCCAAATGGCACATATCTCATAAACCATGAAAAACGGGATCCAGTGACTGTTCTACGTGGACCAATAGTAGATGAAGTGCATCAACAAATCAATCCATGGATATATCAGATTACCAGACAGTACAAAGGAAAGGAACATGTTGAAGTAGAATTTATTGTTGGTCCTATACCTATTGAAGATGGAATTGGTAAAGAAGTTTCCACTCGGATTTCAACTACTATGGAAACCAATAAAACATTTTACACAGATTCTAATGGCCGTGATTTTATCAAAAGGGTACGCGACTATAGAGAAGACTGGGACCTGGAAGTGAACCAGCCCGTTGCTGGAAATTATTACCCTATTAATCTCGGGATATACATAAAGGATAATAAGAAAGAATTCTCAGTTTTGGCGGATAGATCTATCGGAGGGTCCAGCTTAGAAGATGGACAAATCGAGCTAATGGTCCACAGGAGATTGCTGCTTGATGATTCCAGAGGTGTTGCAGAAGCGCTAAATGAAACAGACTGCGTTGCTGACAATTGCAGGGGTCTAACTGTCCAAGGTAAATATTATTATAGAATAGATCCCTTGGGTGAGGGAGCTAAGTGGCGCCGTACTTTTGGCCAGGAAATATATTCTCCACTTTTGTTAGCCTTTTCTGAAAAGGATGATAAAGATGACTGGATGAATACCCATGTAACAACATTTTCAGGATTTGACTCTTACACACTACCAGAAAACATTGTTATTATAACATTACAGGAACTTGATCACGGGACAGTTCTTCTTCGATTAGCACATTTATATGAGATTGAAGAAGACAAGGATCTGTCTGTAATAACAAGTGTGGAGTTGAAAAAGATCTTCCCAGGAAAGAAGATTCAAGAAGTGAAAGAGATGAACTTATCTGCAAATCAAGAAAGGAGAGAGATGGAGAAGAAAAGACTTGTTTGGAAAGTAGAAGGCTCTTCTGGAAATGGAGGTGTTACAAGGGGAGGTCCAGTTGATCCGAAAGAGCTAACTGTGGAGCTTACTCCAATGGAAATCCGCACTTTTATCATTTACTTTGATCATAGTAACCATCTTTTTGATGCATTGTAG 6096 0.4103 MMANTALLFVVLVAAICAAKSEYIDYNTTHRIVPHKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDQNRKFIYVEMAFFQRWWRQQSKAKKLKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKERTLEVVWQGSRSLGSSSQIFTGISPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVEERVDDFVSAALAQANVTRTNHIMWMMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEQWPLKIDDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYQAARQLEFFKGRNESGLNTDALADALALSQHHDAVSGTERQHVAADYAKRISIGYAEAEGLVASALASLVNQRLSSNVINPVKGFQQCPLLNISYCPPSEATLANGKSVVIVVYNPLAWKREEVIRIPVSTGEVFVQDSAGKEIESQLLPLSNITFSIRKKYAKAYIGTAPSGEPKYWLAFPVSVPPIGFSTYMVSRPKQRGRISTMSKEFRSDGSTNNSIEVGQGNLKLLYSADEGKLTQYVNSRNLVAASVEQSYSFYSGYVGDGKDTQASGAYIFRPNGSFPIKSDHQVSFTVLRGPILDEVHQQLNPWVSQILRIYKAKEHAEVEFTIGPIPVDDGIGKEVITQFSTTMKTNKTFYTDSNGRDFIKRIRDFRSDWDLEVNQPIAGNYYPVNLGIYLQDSTMELSVLVDRSVGGSSLVDGQVELMLHRRLLHDDARGVGEVLNETVCIADKCEGLTIQGKLYLRVDHKGEGAKWRRTVGQELYSPLLLAFTEQDGDNWLHFQQPTFSGIDSSYSLPNNTALLTLQDFGNGKVLLRLAHLYEVGEDKDCSVTANVELKKLFPNKKISKVTEMSLSANQERDEMEKKKLVWKVEEGFNEESKVVRGGPVDPTKLVVELAPMEIRTFFVDFNPLQTVPAAEIRVAISTVHDHQVEVPFFHFIRLINKKGIVSGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFQRWWRDQSEAVQDVVKKLVSSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFLKEEFGVTPRVGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRTKRKKEKSLEVIWQGSKSLGSSSQIFAGAFPENYEPPSGFYFEVNDDSAIVQDNMDLFDYNVQDRVNDFVAAALSQANITRTNHVMWTMGTDFKYQYAHTWYRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYAANESWPIKTHDFFPYADRANGYWTGYFTSRPALKRYVRLMSGYYVAARQLEYFRGRTNPGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLAIGYKEAEELVSSSLACLVESTSFTGCQNTVTKFRQCPLLNITYCPATEVELVQGKSLVIVVYNSLGWWRNEVIRIPVIDDKITVHDSNGVEIESQILPLAEVYVDLRNYYVKAYLGQNPVKTPKYWLAFEVSVPPFGFSTYTVLTAKKTGSTRSSVYTHQIHDKSRFEVGQGNLKLKFSTDLEKRTDYVNARNLVEEQVELSYLYYSGFNGTDQKDPQNAGAYIFRPNGTYLINHEKRDPVTVLRGPIVDEVHQQINPWIYQITRQYKGKEHVEVEFIVGPIPIEDGIGKEVSTRISTTMETNKTFYTDSNGRDFIKRVRDYREDWDLEVNQPVAGNYYPINLGIYIKDNKKEFSVLADRSIGGSSLEDGQIELMVHRRLLLDDSRGVAEALNETDCVADNCRGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNTHVTTFSGFDSYTLPENIVIITLQELDHGTVLLRLAHLYEIEEDKDLSVITSVELKKIFPGKKIQEVKEMNLSANQERREMEKKRLVWKVEGSSGNGGVTRGGPVDPKELTVELTPMEIRTFIIYFDHSNHLFDAL 2031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01788 2031 CDD GH38N_AMII_LAM_like 1052 1328 - -
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 N-terminal domain 1053 1364 IPR000602 GO:0004559|GO:0006013
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 N-terminal domain 38 349 IPR000602 GO:0004559|GO:0006013
Car03g01788 2031 Gene3D Glycoside hydrolase 38, N terminal domain 37 317 IPR027291 -
Car03g01788 2031 Gene3D Glycoside hydrolase 38, N terminal domain 1052 1332 IPR027291 -
Car03g01788 2031 SUPERFAMILY Glycoside hydrolase/deacetylase 1048 1365 IPR011330 GO:0005975
Car03g01788 2031 SUPERFAMILY Glycoside hydrolase/deacetylase 26 352 IPR011330 GO:0005975
Car03g01788 2031 SMART Alpha_mann_mid_2 1369 1443 IPR015341 GO:0004559|GO:0006013
Car03g01788 2031 SMART Alpha_mann_mid_2 354 428 IPR015341 GO:0004559|GO:0006013
Car03g01788 2031 Gene3D Glycoside hydrolase family 38, central domain 1411 1468 IPR037094 GO:0004559|GO:0006013
Car03g01788 2031 Gene3D Glycoside hydrolase family 38, central domain 396 452 IPR037094 GO:0004559|GO:0006013
Car03g01788 2031 PANTHER ALPHA-MANNOSIDASE 1042 2024 - -
Car03g01788 2031 PANTHER ALPHA-MANNOSIDASE 12 1009 - -
Car03g01788 2031 Gene3D Glycoside hydrolase family 38, central domain 1333 1410 IPR037094 GO:0004559|GO:0006013
Car03g01788 2031 Gene3D Glycoside hydrolase family 38, central domain 318 395 IPR037094 GO:0004559|GO:0006013
Car03g01788 2031 SUPERFAMILY Families 57/38 glycoside transferase middle domain 1368 1462 IPR028995 -
Car03g01788 2031 SUPERFAMILY Galactose mutarotase-like 459 1008 IPR011013 GO:0003824|GO:0005975|GO:0030246
Car03g01788 2031 PANTHER ALPHA-MANNOSIDASE 1042 2024 - -
Car03g01788 2031 PANTHER ALPHA-MANNOSIDASE 12 1009 - -
Car03g01788 2031 CDD GH38N_AMII_LAM_like 37 313 - -
Car03g01788 2031 Gene3D - 598 864 - -
Car03g01788 2031 Gene3D - 1612 1878 - -
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 C-terminal domain 602 816 IPR011682 GO:0004559|GO:0006013
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 C-terminal domain 1615 1830 IPR011682 GO:0004559|GO:0006013
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 899 1005 IPR041147 -
Car03g01788 2031 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 1912 2018 IPR041147 -
Car03g01788 2031 Pfam Alpha mannosidase middle domain 1370 1461 IPR015341 GO:0004559|GO:0006013
Car03g01788 2031 Pfam Alpha mannosidase middle domain 354 446 IPR015341 GO:0004559|GO:0006013
Car03g01788 2031 Gene3D - 1898 2026 - -
Car03g01788 2031 Gene3D - 883 1010 - -
Car03g01788 2031 Gene3D - 1489 1611 IPR013780 -
Car03g01788 2031 Gene3D - 474 597 IPR013780 -
Car03g01788 2031 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 448 IPR028995 -
Car03g01788 2031 Coils Coil 1959 1979 - -
Car03g01788 2031 SUPERFAMILY Galactose mutarotase-like 1471 2021 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01788 Car-Chr3 63745019 63768378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01788 1 947 Glycoside Hydrolase AT3G26720 71.835 0.0 1448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01788 K01191 - gmx:100795651 1785.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01788 03 63745019 63768378 Car03g01788 03 63745019 63768378 ECH
Car02g00504 02 5919088 5924337 Car03g01788 03 63745019 63768378 ECH