Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01871 ATGAGACAGCACAAGCAACTCCCCACCGCGAGACCGAAGATTCTGTATCTGCTGTGTGGCGCTGCATTCTTCTCCTTTCTCCTCTTCTCCATCCAATCCTCTCTCTTCACCGGCTCCTTCTATTCAGATCGCAACTCCGAATCAATTCGCGTCTTGTTTCAGTTTCAGTCCAATGTTCAGCAATGTGTGGCAAATAGGGGGCTTGGACTAACTGCAGAAATTATTGACCATTGCACATTGGTTCTTAAATACCCCGAAGGCACCAACAGCACTTGGTACAATCAGCAGTTTAAAAAATTTGAGCCATTGGAGTACACATATGATGTGTGTGAGGCAATACTCTTGTGGGAACAGTATCGAAACATGACCACAGTGTTGACAAGAGAGTATCTTGACGTTCGGCCCGGTGGTTGGTTAGATTATGCACCACTAAGGATAGCACAATTGGGGGCGAAGAACTGCTATAATAAGACTCTTTGTGAAGAGCAACTTAATATATTATTACCTGCAAAACCCCCATTTCATCCAAGGCAGTTTCATACGTGTGCTGTTGTTGGGAATTCTGGGGACCTTCTGAAGACAGAATTTGGGAAAGAAATTGATAGTCACGATGCTGTTTTTCGAGACAACGAGGCCCCTGTTAATGCGAAATATGCCAAATACGTTGGTCTTAAGAGGGATTTCCGTCTAGTTGTAAGAGGTGCTGCTCGCAACATGGTTCCTATTTTAAATGGGTCTGATACTGAGGTACTCATAATCAAAAGTCTGACACACAGAGAAATCAATGCAGTTATAAAGACTATACCAAATCCAGTCTATCTCTTTCAAGGTATTGTCCTACGTCGAGGTGCCAAAGGAACTGGAATGAAGTCTATTGAATTAGCACTCTCCATGTGTGATATTGTTGATATATATGGTTTCACCGTTGATCCTGGATACACTGAATGGACAAGATACTTCTCTGATCCTAGGAAGGGACACAATCCACTTCAAGGAAGAGCATACTACCAACTTCTAGAATGTCTTGGGGTAATCAGGATTCACTCCCCCATGAGATCCCAGAGGAGGCAAGACTGGTCAGATGTGCCAAGTAGAGAAATGATAAGCCAAGCACATGCAGCAGCTTGGCGCTTGAGAAAGAGTTCAGCTGGTAAGGCTGGGGGTTTAGGACAGTTTGGCAATTGTAAGGTGTGGGGCAATGTAGACCCAGACAAAAGTGGACCTATCTCAGGCTCACCAGATATGAGTGATGTCAGGAAGAATTCAAATTATCAAAAATGGGAAGTCATGCCTTTGAAAAGTTTGAGGAAAGAAGCACAGGTTCACTATAAGCAGATGGAAGGGGTCTCCCAATATAAAATGGATGGCAATAAGTTGGATGATCTAGTGTGTGTGAGACACTCCTTAAAATCTGATGTGTAA 1422 0.4353 MRQHKQLPTARPKILYLLCGAAFFSFLLFSIQSSLFTGSFYSDRNSESIRVLFQFQSNVQQCVANRGLGLTAEIIDHCTLVLKYPEGTNSTWYNQQFKKFEPLEYTYDVCEAILLWEQYRNMTTVLTREYLDVRPGGWLDYAPLRIAQLGAKNCYNKTLCEEQLNILLPAKPPFHPRQFHTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNAKYAKYVGLKRDFRLVVRGAARNMVPILNGSDTEVLIIKSLTHREINAVIKTIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSDPRKGHNPLQGRAYYQLLECLGVIRIHSPMRSQRRQDWSDVPSREMISQAHAAAWRLRKSSAGKAGGLGQFGNCKVWGNVDPDKSGPISGSPDMSDVRKNSNYQKWEVMPLKSLRKEAQVHYKQMEGVSQYKMDGNKLDDLVCVRHSLKSDV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01871 473 PANTHER SIALYLTRANSFERASE-LIKE PROTEIN 1 2 471 IPR044782 GO:0008373|GO:0009846|GO:0009860
Vifa5g01871 473 Gene3D Glycosyl transferase family 29 120 349 IPR038578 -
Vifa5g01871 473 Pfam Glycosyltransferase family 29 (sialyltransferase) 169 238 IPR001675 GO:0006486|GO:0008373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01871 Vifa-Chr5 545081834 545087646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01871 64 344 Glycosyltransferase AT1G08660 87.544 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01871 - - gmx:100527382 824.313