Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2456 ATGATGGGCGCTGCTACGGTGCTACTCGTCGTTATAGTGGCGGCGATTTGGGTGGCGCAATCACACTCAGAGTACATAGAGTACAACACCACGCAGAGGATCGTCAACGGTCAAATAAACGTTCACTTGGTGCCTCACTCCCACGACGATGTTGGCTGGCTCAAGACCGTTGATCAGTACTACGTCGGCGCCAACAACTCCATTCGTGGTGCATGTGTGCAGAACGTGCTGGATTCTGTGATCTCTGCGCTTTTGGAAGACAAGAATCGCAAATTTATCTATGTTGAGATGGCATTTTTCCAACGATGGTGGAGACAGCAAAGTAAAGCTAAGAAAATTAAAGTGAAGGAGCTTGTTGACTCTGGTCAGCTTGAATTCATAAATGGGGGCATGTGCATGCATGATGAGGCCACCCCGCATTACATTGACCTGATTGATCAGACAACTCTCGGGCATCAATTCATTAAAGATGAATTCGGTAAGACTCCAAGAGTTGGCTGGCAGATCGATCCTTTTGGCCATTCTGCGGTTCAGGCGTACTTGCTTGGCGCTGAGCTGGGATTCGATTCGCTCTTTTTTGCCAGAATTGATTACCAGGATAGAGCCAAGCGATTGAAGGAGAAGATGCTTGAGGTTATTTGGCAGGGTTCTAGGTCTCTTGGTTCTTCTTCACAAATATTTACTGGGATATTTCCCAGGCATTACGATCCTCCTGATGGCTTCACGTTTGAGATCAATGATGTTTCCCCTCCTATTCAGGATGACATTGAACTGTTTGACTATAATGTTCAAGAAAGGGTCAATGACTTTGTAGCTGCAGCCATATATCAGGCTAATGTGACCAGAACCAATCACATTATGTGGGCAATGGGGACAGACTTCCGGTATCAATATGCTGATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTGAATCAGGATGGGCGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATTCAAAATATGCAGCAAATGAGCAATGGCCTCTTAAAGTTGATGATTTCTTCCCATATGCAGATAAACCGAATGCATATTGGACTGGCTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGAGTGATGAGTGGTTACTATCAGGCAGCAAGGCAATTAGAATTTTTCAAAGGGAGGAATGCATCTGGACCAAATACTAATTCACTAGCAGAAGCTTTATCAATTGCTCAGCATCATGATGCAGTTAGTGGCACAGAGAGACAACATGTTGCTGCTGATTATGCACTGCGACTGTCATTGGGCTATAAGGAGGCAGAAGTGGTGGTTGCATCTGCCCTTGCTTTCTTGGTAAACCAAAAGTTAAGTTCGCAACAGGTGAAGCCAGTGACGGACTTACAACAGTGTCCTCTACTCAATATAAGTTACTGTCCTTCATCAGAAGCTACGTTGAGCAATGGAAAAAGCTTGGTGATTGTTGTTTATAACCCACTTGCTTGGAAGAGGGAGGAAGTAATTCGAATTCCTGTTTCCACCACAGACATTTCTGTCAAAGATTCTGCTGGGAATGAAGTTGAGTCTCAAATTCTCCCACTATCCAATGCCACTTCAATCCTAAGAAAATACTATGTCAAAGCGTATGTAGGAAAATCTCCTGGTTCAGAACCAAAGTACTGGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAGCACATACATAGTCTCCAAGCCTAGACAGACAGGTAATCGTTCAACCATATCCAAGGTGCACAAATCAGAAAGAAGTACAAATACCAGCATAGAAGTTGGACAAGGGAATTTGAAGCTGCTTTATTCTGCAGATGAAAGAAAGCTTACTCATTATGTTAACAGTAGAAATCTTGTTAAAGCATCTGTTGAACAAACATACAGTTATTATTCTGGAAATGATGGAACAGATAAAGATCCTCAGGCTTCTGGGGCATATGTATTCCGCCCAAATGGATCATTTCCAATTAGATCTGATCGCCAGGAATCTTTTACTGTTTTAAGTGGTCCAGTGCTGGATGAAGTTCATCAGCAGCTCAATCCATGGATATCTCAGATTACAAGGATATTCAAGGGAAAGGAACATGCTGAAGTTGAGTTCACAGTTGGGCCTATACCTGTGGATGATAACATTGGGAAAGAACTTATTACCCAGTTTACAACCTCAATGAAGACCAACAAAACATTCTACACAGATTCCAATGGACGTGACTTCATTAAAAGGATTCGAGATTTCCGGACAGACTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTATCCGGTTAACTTAGGAATATATGTGCAAGATAGCAACACAGAACTCTCAGTGTTGGTGGACCGTTCAGTTGGGGTTTCAAGCTTGGTAGACGGTCAAGTAGAGCTCATGCTCCACAGGAGGCTTATCCATGACGATACAAGAGGCGTTGGTGAGGCACTCAATGAAACAGTTTGCATTGCTGGTAGCTGTGAAGGTTTAACCATTCAAGGAAAACTGTACCTTAAAATTGATCCTATAGGTGAAGGTGCTAAGTGGCGTCGAACAGTTGGCCAGGAATTATATTCACCACTGTTGTTGGCATTCACAGAACAGGATGGGGATAATTTGTCAAATTTTCAATCATCAACGTTTTCTGGCATAGATTCTTCATACAGTTTCCCAAACAATACTGCTCTTTTAACACTCCAGGAACTTTACAGTGGAAAAATACTTCTAAGATTGGCTCACCTTTACGAGATTGAGGAGGACAAAGATTATTCAGCAATGGCAAGCGTGGAATTGTTAAAGCTGTTTCCTAACAAGAAGATAAGGAAAGTGACCGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAGGTTAGCATGGAAAGTAGAAGGCTCCACTAAAGAAACTAAGGTGGTGAGGGGAGGGCCTGTTGATCCTGAAAAGTTGGTGGTTGAACTTGCTCCAATGGAAATTAGGACATTTTTTATTGAATTTGCTTCCCTTCAAACGGTTCCTGAAGCAGAAAATCAAGCGGCAACGTAA 3075 0.426 MMGAATVLLVVIVAAIWVAQSHSEYIEYNTTQRIVNGQINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSKAKKIKVKELVDSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKDEFGKTPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKMLEVIWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDIELFDYNVQERVNDFVAAAIYQANVTRTNHIMWAMGTDFRYQYADSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDSKYAANEQWPLKVDDFFPYADKPNAYWTGYFTSRPALKGYVRVMSGYYQAARQLEFFKGRNASGPNTNSLAEALSIAQHHDAVSGTERQHVAADYALRLSLGYKEAEVVVASALAFLVNQKLSSQQVKPVTDLQQCPLLNISYCPSSEATLSNGKSLVIVVYNPLAWKREEVIRIPVSTTDISVKDSAGNEVESQILPLSNATSILRKYYVKAYVGKSPGSEPKYWLAFPVSVPPLGFSTYIVSKPRQTGNRSTISKVHKSERSTNTSIEVGQGNLKLLYSADERKLTHYVNSRNLVKASVEQTYSYYSGNDGTDKDPQASGAYVFRPNGSFPIRSDRQESFTVLSGPVLDEVHQQLNPWISQITRIFKGKEHAEVEFTVGPIPVDDNIGKELITQFTTSMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSNTELSVLVDRSVGVSSLVDGQVELMLHRRLIHDDTRGVGEALNETVCIAGSCEGLTIQGKLYLKIDPIGEGAKWRRTVGQELYSPLLLAFTEQDGDNLSNFQSSTFSGIDSSYSFPNNTALLTLQELYSGKILLRLAHLYEIEEDKDYSAMASVELLKLFPNKKIRKVTEMSLSANQERAEMEKKRLAWKVEGSTKETKVVRGGPVDPEKLVVELAPMEIRTFFIEFASLQTVPEAENQAAT* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2456 1024 Pfam Alpha mannosidase middle domain 356 448 IPR015341 GO:0004559|GO:0006013
Amo06g2456 1024 SUPERFAMILY Families 57/38 glycoside transferase middle domain 355 450 IPR028995 -
Amo06g2456 1024 CDD GH38N_AMII_LAM_like 39 315 - -
Amo06g2456 1024 SMART Alpha_mann_mid_2 356 430 IPR015341 GO:0004559|GO:0006013
Amo06g2456 1024 Pfam Glycosyl hydrolases family 38 C-terminal domain 605 818 IPR011682 GO:0004559|GO:0006013
Amo06g2456 1024 Gene3D - 476 602 IPR013780 -
Amo06g2456 1024 Gene3D Glycoside hydrolase 38, N terminal domain 39 319 IPR027291 -
Amo06g2456 1024 PANTHER ALPHA-MANNOSIDASE 11 1013 - -
Amo06g2456 1024 PANTHER ALPHA-MANNOSIDASE 11 1013 - -
Amo06g2456 1024 Gene3D - 885 1012 - -
Amo06g2456 1024 SUPERFAMILY Galactose mutarotase-like 459 1009 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo06g2456 1024 Pfam Glycosyl hydrolases family 38 N-terminal domain 40 351 IPR000602 GO:0004559|GO:0006013
Amo06g2456 1024 SUPERFAMILY Glycoside hydrolase/deacetylase 28 354 IPR011330 GO:0005975
Amo06g2456 1024 Gene3D Glycoside hydrolase family 38, central domain 399 454 IPR037094 GO:0004559|GO:0006013
Amo06g2456 1024 Gene3D - 603 866 - -
Amo06g2456 1024 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 901 1006 IPR041147 -
Amo06g2456 1024 Gene3D Glycoside hydrolase family 38, central domain 320 398 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2456 Amo-Chr6 86759168 86769319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2456 2 949 Glycoside Hydrolase AT3G26720 72.679 0.0 1458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2456 K01191 - gmx:100795651 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3081 16 133367729 133392032 Amo06g2456 06 86759168 86769319 hybridization