Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1868 ATGACGGCCACTGCTTGGGTGGTAGTTGTCGTTTTGGTGGCTGCGATTTGGGTGGCTGAATCGGAGTACATAGAGTACAACACGACGCAGAGGATCGTCCCCGACAAAATCAACGTCCACTTGGTGCCTCACTCCCACGATGATGTTGGGTGGCTCAAGACCGTCGATCAGTACTACGTTGGAGCCAACAACTCCATTCGTGGTGCATGTGTGCAGAACGTGCTGGATTCTGTGATATCTGCGCTCTTGGAAGACAAGAATCGCAAGTTTATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGACAGCAAAGTAATGCTATGAAAATTAAAGTGAAGGAGCTTGTCAACTCGGGTCAACTGGAATTCATAAATGGGGGTATGTGCATGCATGATGAGGCCACCCCACATTACATTGACCTAATTGATCAGACAACTCTTGGCCATCAATTCATCAAGGAGGAATTTGGTAAGGTTCCAAGAGTTGGCTGGCAGATCGATCCATTTGGCCATTCTGCGGTTCAGGCTTACTTGCTTGGTGCAGAGCTGGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTGAAGGAGAAGACTCTTGAGATTGTTTGGCGGGGTTCTAGGTCTCTTGGTTCTTCTTCACAAATATTCACCGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACGTTTGAGATAAACGATGTTTCCCCTCCTATTCAGGATGACATCCTACTGTTTGACTATAATGTTCAAGAAAGGGTCAACGACTTTGTTTCTGCTGCCTTAGCTCAGGCTAATGTGACCAGAACAAATCACATTATGTGGACAATGGGGACAGACTTCCGTTATCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCATTATGTCAATCAGGATGGTCGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATGCAAAACATGCAGCAAATGAGCAATGGCCTCTTAAAGTTGATGATTTCTTTCCGTATGCAGATCATCCGAATGCATATTGGACTGGCTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGAGTGATGAGTAGTTACTTTCAGGCAGCAAGACAATTGGAATTTTTTAAAGGGAGGAATGAATCAGGACCAAATACCAATTCGTTAGCAGATGCTTTAGCTATTGCTCAGCATCATGATGCAGTTAGTGGCACAGAGAGACAGCATGTTGCTGCTGATTATGCACTGCGACTGTCAATTGGCTATGCAGAGGCAGAAGAATTGGTTGCATCTGCACTTGCTTTCTTGGTAAACCAAAAATCAATTTCCCACGGGGGGAAGCCAGTGACAGAGTTCCAGCAGTGTCCTCTTCTTAATATTAGTTACTGTCCACCATCAGAAGCTACCTTGGCTGACGGAAAAAGCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAGGAAGTGATTCGAATTCCAGTTTCCACTAGAGAGGTTTTTGTCCAGGATTCTGCTGGGAAGGAAATTGAGTCTCAGCTTCTCCCTCTGTCTAACGCTACTCTGAGAGTAAGAAAACAGTATGTCAAAGCATACAAAGGAAAAGCTCCTGGTGGGGAACTCAAGTACTGGCTTGCATTTCCTGTATCTGTACCTACCCTAGGTTTCAGCACGTACATAGTTTCAAGGCCTAAACAGACAGGTAATCGATCAACCATCTCAATGGTGCACAGATCAGATGGAAATACAAATAATAGCATAGAAGTTGGACAAGGGAATCTAAAGCTGCTTTATTCTGCCAATGAAGGAAAACTGACTCATTATGTTAACAGTAGAAATCTGGTTAAAGCACCCATTGAACAATCATACAACTACTATTTGGGAAATGATGGGACAGATAAAGATTCTCAGGCTTCTGGGGCATACGTATTCCGCCCAAATGGCTCATTTCCAATTAAATCTGATCACCAGGTATCTTTTACTGTGCTGCGTGGTCCAATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCTCAGATTATGAGGATATTCAAAGGAAAGGAACATGCTGAAGTTGAGTTCACGGTTGGGCCTATACCTGTGGATGATGACATTGGAAAAGAAATTATTACCCAGTTTACAACTTCAATGAAGACCAACAAGACATTTTACACAGATTCTAATGGACGTGATTTCATTAAAAGGATTCGAGATTTCAGGGCAGACTGGGATCTACAAGTCAACCAAACCATAGCTGGAAACTATTACCCTGTTAATTTGGGAATATATGTGCAAGATAGCAGTATGGAACTCTCAGTGTTGGTGGACCGCTCAGTTGGGGGTTCGAGCTTGCTAGATGGTCAAATAGAGCTTATGCTCCACAGGAGGCTTCTCCATGACGATGCAAGAGGTGTTGGTGAGGCACTCAATGAAACAGTTTGCATTGCTGATAGCTGTGAAGGTTTAACAATTCAAGGAAAACTGTATCTTAGAATTGATCCTATAGGTGAAGGTGCTAAGTGGCGTCGAACAGTTGGCCAGGAATTATATTCACCGTTGTTGTTGGCCTTCACAGAACAGGATGGGGATAATTGCTTAAATTTCCAATCGTCAACATTTTCTGGCATGGATTCTTCCTACAGTTTACCAAACAATACCGCTGTTTTAACCCTCCAGGAAGTTGACAATGGGAAAGTTCTCCTAAGATTGGCTCACCTTTATGAGGTTGGAGAGGACAAAGATTACTCGATAACGGCAAGTGTGGAATTGAAAAAGCTGTTTCCTACCAAGAAGATAAGTAGAGTGACAGAGATGAGCTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAATAAGTTAATCTGGCAGGTAGAAGGCTCCACAGAAGAACCTAAGGTAGTGACGGGTGGACCTGCTGATCCTGAAAAGCTGGTAGTGGAACTGGCTCCAATGGAGATTAGGACATTTTTTGTTGACTTTGATCCCCTCCAAACAGTCCCTGAAGCAGAAAGTCACTGTGGCAACGTAGCAAGATTACACTCACAATAA 3090 0.4304 MTATAWVVVVVLVAAIWVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSNAMKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEIVWRGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTRTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKHAANEQWPLKVDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSSYFQAARQLEFFKGRNESGPNTNSLADALAIAQHHDAVSGTERQHVAADYALRLSIGYAEAEELVASALAFLVNQKSISHGGKPVTEFQQCPLLNISYCPPSEATLADGKSLVIVVYNPLAWKREEVIRIPVSTREVFVQDSAGKEIESQLLPLSNATLRVRKQYVKAYKGKAPGGELKYWLAFPVSVPTLGFSTYIVSRPKQTGNRSTISMVHRSDGNTNNSIEVGQGNLKLLYSANEGKLTHYVNSRNLVKAPIEQSYNYYLGNDGTDKDSQASGAYVFRPNGSFPIKSDHQVSFTVLRGPILDEVHQQLNPWVSQIMRIFKGKEHAEVEFTVGPIPVDDDIGKEIITQFTTSMKTNKTFYTDSNGRDFIKRIRDFRADWDLQVNQTIAGNYYPVNLGIYVQDSSMELSVLVDRSVGGSSLLDGQIELMLHRRLLHDDARGVGEALNETVCIADSCEGLTIQGKLYLRIDPIGEGAKWRRTVGQELYSPLLLAFTEQDGDNCLNFQSSTFSGMDSSYSLPNNTAVLTLQEVDNGKVLLRLAHLYEVGEDKDYSITASVELKKLFPTKKISRVTEMSLSANQERAEMEKNKLIWQVEGSTEEPKVVTGGPADPEKLVVELAPMEIRTFFVDFDPLQTVPEAESHCGNVARLHSQ* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1868 1029 SMART Alpha_mann_mid_2 354 428 IPR015341 GO:0004559|GO:0006013
Dod01g1868 1029 Pfam Glycosyl hydrolases family 38 N-terminal domain 38 349 IPR000602 GO:0004559|GO:0006013
Dod01g1868 1029 PANTHER ALPHA-MANNOSIDASE 10 1011 - -
Dod01g1868 1029 SUPERFAMILY Glycoside hydrolase/deacetylase 26 352 IPR011330 GO:0005975
Dod01g1868 1029 Gene3D - 600 864 - -
Dod01g1868 1029 Gene3D - 474 599 IPR013780 -
Dod01g1868 1029 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 900 1004 IPR041147 -
Dod01g1868 1029 Pfam Glycosyl hydrolases family 38 C-terminal domain 602 816 IPR011682 GO:0004559|GO:0006013
Dod01g1868 1029 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 448 IPR028995 -
Dod01g1868 1029 CDD GH38N_AMII_LAM_like 37 313 - -
Dod01g1868 1029 Gene3D - 883 1009 - -
Dod01g1868 1029 Gene3D Glycoside hydrolase 38, N terminal domain 37 317 IPR027291 -
Dod01g1868 1029 SUPERFAMILY Galactose mutarotase-like 457 1007 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod01g1868 1029 Gene3D Glycoside hydrolase family 38, central domain 318 396 IPR037094 GO:0004559|GO:0006013
Dod01g1868 1029 PANTHER ALPHA-MANNOSIDASE 10 1011 - -
Dod01g1868 1029 Pfam Alpha mannosidase middle domain 354 446 IPR015341 GO:0004559|GO:0006013
Dod01g1868 1029 Gene3D Glycoside hydrolase family 38, central domain 397 452 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1868 Dod-Chr1 53429973 53441582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1868 11 945 Glycoside Hydrolase AT3G26720 73.746 0.0 1467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1868 K01191 - gmx:100795651 1806.57