Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0487 ATGGCAATCCCTGTGTTTCTGTGCATTGTCCTGTTGGTGGGCTCTCTTATATCCTCGGAATCGAAGTATATAAGGTACAATACGACATCGAGCATTGTTCCTGGGAAGCTAAATGTTCATTTGGTCGCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAATTCCATTCAGGGGGCGTGCGTTCAAAACGTGCTAGATTCTCTGGTGCCAGCATTGTTGGCGGACAAGAATCGCAAGTTCATTTATGTTGAGCAGGCATTTTTTCAGCGTTGGTGGAGAGAACAGAGTGAGGCAGTTCAGAACACAGTCAAGGAGCTAGTCAAATCTGGTCAATTGGAGTTCATAAATGGGGGTATGTGTATGCATGATGAGGCTACCACGCATTATATTGACATGATTGATCAGACAACTCTTGGACATCAATTTCTCAAAGAGGAATTTGGTGTAACTCCGAGAATAGGTTGGCAAATTGATCCCTTTGGACATTCTGCAGTTCAGGCTTACTTGTTGGGAGCCGAGGTTGGATTTGATTCACTGTTCTTCGCTCGGATTGACTACCAAGACCGAGCAAAGAGGAAAGATGATAAGTCACTTGAAGTTGTTTGGCGAGGCTCAAAGAACCTTGGTTCATCTGCGCAAATATTTGCTGGTGCGTTCCCAGAGAATTATGAACCTCCTACTAGTAATTTCTACTTTGAAGTAAATGATGACTCTCCTCCTGTCCAGGACGATATCAATTTGTTTGACTACAATGTCGCTGAACGGGTAAACGAGTTTGTCTCAGCTGCAATTTCGCAGGCTAATATTACCCGCACAAATCATATAATGTGGACAATGGGGACGGATTTCAAGTACCAATATGCACATACTTGGTTTCGGCAACTGGACAAGTTTATTCACTATGTCAATCAAGACGGCCGGGTTCATGCCCTATATTCGACTCCATCAATTTATACTGACGCAAAATATGGAGCAAATGAGGCATGGCCAATCAAGACTGATGACTACTTTCCGTATGCTGATCGTGTAAATGCCTATTGGACGGGGTATTTTACAAGTAGGCCAGCTATGAAAGGTTATGTCAGAATGATGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAATATTTTAAAGGAAAGAGCTCCTCGGGTCCTAAAACTGACTATTTGGCTGATGCTTTGGCTATTGCTCAACACCATGATGCAGTTACTGGAACAGAAAAGCAGCATGTAGCTAATGATTATGCAAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCTGCATCACTTGCTTGCATGACACAGGCAACATCCAAAAATGGTTGTAGGAATACAGAGACCCAATTTCATCAGGCAAATAACGATCTTCCTTTGTCCTACAGTTTTAATTCGGCCTTCTTTAGCCTACTATCTGTGAATAGTTGGTCTGCAGACTTATTGATTTCTTTTTATATTCCATGGCTTTCTGCCATCTTGTCGTTACAGTGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTTTTCAAATGGGAAAAACCTGGTTGTTGTTGTTTACAATCCTCTGGGATGGAAAAGAGAGGATGTTATAAGAATTCCTGTTATTAATGAAGAAGTTTATGTTCGGGATTCGAGTGGAAAACAAATCCAATCCCAGCTTCTACCAATTCTTAATGCTTCACTAGCTTTAAGAAACTATCACGCTAGGGCATACCTGGGAGTGTCTCCAACTGTAAACCCCAAGTATTGGCTTGCATTTTCAGCATCTGTTCCTCCACTTGGATTTAGCACTTACTACATATCAAGCGCGAAACAATCAGTTGCAGCTGCTATTTCGGACAGACAAACGGCATTCAAGTCTGGAAGTCAGAGTCAGTCAATTGAAGTAGGCCCAGGAAACTTGAAACTAATTTATTCTGGGAAGGAAGGGAAACTAACCGATTATATCAACACCGGAAGCAAGGTCAAAGAATCAATAGACCAAATATACAATATTTATGCTGGGAATGGAAATGATGGAACTCAGACTGCTCAGGCCTCAGGAGCATATATTTTTCGCCCAAATGGTACATATCCCGTCAAATCTCAAGGGGAGTTTCCTCTCACAGTTATGCGGGGACCTATTGTTCATGAGGTGCATCAGAAGATCAATTCATGGATATCCCAGACCACCAGACTGTACAAGGGCAAAGAACATGTTGAAGTTGAGTTCATTGTTGGACCCATACCCATTGATGATGGAGTTGGCAAAGAAATTGCTACTCAAATTAAAATAAATCTGGCAAGCAACAAAACCTTATTTACCGATTCTAATGGTCGTGATTTTATCACAAGGATTCGAAACTATCGAAAAGACTGGGACTTGGAAGTCAATCAACCTGTTGCTGGAAATTACTACCCTGTGTGTATCAATCTTGGAATTTACCTGAGGGATAAAAGTAAAGAGTTTTCTGTATTAGTTGATCGATCTGTGGGGGGATCCAGCCTCGTGGATGGCCAAGTGGAGCTAATGGTTCATAGGAGATTAATTCAGGATGATTCCAGGGGTGTTGCAGAGGCACTAAATGAAACAGTTTGCATTCAAGATAAGTGCACCGGATTAACAGTGCTAGGCAAGTACTATTTCAGAATTGACCCTGTGGGAGAGGGTGCTAGATGGCGTCGATCTTTTGGTCAGGAGATATACTCACCGTTTCTTTTAGCTTTCACAGAAGAGAGTGGAGATAATTGGAGAAATTCTCACGTGACAACCTTTTCGGGGATGGGTTCCTTGTACCAGTTACCAGATAATGTTGCAATAATAACCCTCCAGGAACTGGAAGATAAAAAAGTTCTCCTTCGGTTGGCACACTTATACGAGATTGGCGAAGACAAGCATCTTTCAGTTATGGCAAATGTGGAACTGAAAAAGGTGTTCCCAGATAAAAAGATAAACCAAATAACTGAGATGAGTTTGTCTGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGATTGGTGTGGAAGGTAGAAGAAGAAGGAACACCTCAAGAACCCCAGGTGTCAAGGGGAGGACCGGTTGATCCAGAAAAGCTAATCGTAGAACTTGCTCCAATGGAAATACGAACCTTCATTATCAGTTTTTAG 3177 0.4208 MAIPVFLCIVLLVGSLISSESKYIRYNTTSSIVPGKLNVHLVAHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWREQSEAVQNTVKELVKSGQLEFINGGMCMHDEATTHYIDMIDQTTLGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDDKSLEVVWRGSKNLGSSAQIFAGAFPENYEPPTSNFYFEVNDDSPPVQDDINLFDYNVAERVNEFVSAAISQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKYGANEAWPIKTDDYFPYADRVNAYWTGYFTSRPAMKGYVRMMSGYYLAARQLEYFKGKSSSGPKTDYLADALAIAQHHDAVTGTEKQHVANDYAKRLSIGYTEAEKVVAASLACMTQATSKNGCRNTETQFHQANNDLPLSYSFNSAFFSLLSVNSWSADLLISFYIPWLSAILSLQCPLLNISYCPASEVDFSNGKNLVVVVYNPLGWKREDVIRIPVINEEVYVRDSSGKQIQSQLLPILNASLALRNYHARAYLGVSPTVNPKYWLAFSASVPPLGFSTYYISSAKQSVAAAISDRQTAFKSGSQSQSIEVGPGNLKLIYSGKEGKLTDYINTGSKVKESIDQIYNIYAGNGNDGTQTAQASGAYIFRPNGTYPVKSQGEFPLTVMRGPIVHEVHQKINSWISQTTRLYKGKEHVEVEFIVGPIPIDDGVGKEIATQIKINLASNKTLFTDSNGRDFITRIRNYRKDWDLEVNQPVAGNYYPVCINLGIYLRDKSKEFSVLVDRSVGGSSLVDGQVELMVHRRLIQDDSRGVAEALNETVCIQDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPFLLAFTEESGDNWRNSHVTTFSGMGSLYQLPDNVAIITLQELEDKKVLLRLAHLYEIGEDKHLSVMANVELKKVFPDKKINQITEMSLSANQERAEMEKKRLVWKVEEEGTPQEPQVSRGGPVDPEKLIVELAPMEIRTFIISF 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0487 1058 Coils Coil 994 1014 - -
Glsi02g0487 1058 Gene3D - 519 639 IPR013780 -
Glsi02g0487 1058 CDD GH38N_AMII_LAM_like 37 314 - -
Glsi02g0487 1058 FunFam Alpha-mannosidase 37 318 - -
Glsi02g0487 1058 Gene3D Glycoside hydrolase family 38, central domain 319 397 IPR037094 GO:0004559|GO:0006013
Glsi02g0487 1058 FunFam Alpha-mannosidase 933 1058 - -
Glsi02g0487 1058 SUPERFAMILY Families 57/38 glycoside transferase middle domain 354 448 IPR028995 -
Glsi02g0487 1058 Gene3D - 644 913 - -
Glsi02g0487 1058 FunFam Alpha-mannosidase 317 397 - -
Glsi02g0487 1058 Gene3D Glycoside hydrolase family 38, central domain 398 453 IPR037094 GO:0004559|GO:0006013
Glsi02g0487 1058 PANTHER ALPHA-MANNOSIDASE 10 1058 - -
Glsi02g0487 1058 FunFam Alpha-mannosidase 519 645 - -
Glsi02g0487 1058 Gene3D - 932 1058 - -
Glsi02g0487 1058 FunFam Alpha-mannosidase 645 913 - -
Glsi02g0487 1058 Pfam Alpha mannosidase middle domain 355 446 IPR015341 GO:0004559|GO:0006013
Glsi02g0487 1058 FunFam Alpha-mannosidase 398 453 - -
Glsi02g0487 1058 SUPERFAMILY Glycoside hydrolase/deacetylase 26 351 IPR011330 GO:0005975
Glsi02g0487 1058 SUPERFAMILY Galactose mutarotase-like 507 1058 IPR011013 GO:0003824|GO:0005975|GO:0030246
Glsi02g0487 1058 Pfam Glycosyl hydrolases family 38 C-terminal domain 648 865 IPR011682 GO:0004559|GO:0006013
Glsi02g0487 1058 Gene3D Glycoside hydrolase 38, N terminal domain 37 318 IPR027291 -
Glsi02g0487 1058 SMART Alpha_mann_mid_2 355 429 IPR015341 GO:0004559|GO:0006013
Glsi02g0487 1058 Pfam Glycosyl hydrolases family 38 N-terminal domain 38 350 IPR000602 GO:0004559|GO:0006013
Glsi02g0487 1058 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 947 1055 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0487 Glsi-ChrGlsi02 3115410 3122953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0487 1 970 Glycoside Hydrolase AT5G13980 65.641 0.0 1328