Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03297 ATGATGATAACGGCCGATACGGTGGTGCTATTCGCCGTTTTGGCGATGGCGTTATGTATAGTGAAATCAGACTATATAGAGTACAACACCTCACACAGAATCGTCCCCAACAAACTCAATGTTCACTTGGTTCCTCACTCCCACGATGATGTTGGTTGGCTTAAAACCGTCGATCAGTACTACGTTGGATCCAACAACTCCATTCGTGGTGCATGTGTGCAGAACGTGCTTGATTCTGTGATGTCCGCACTCTTGGAGGATCAAAACCGCAAGTTTATATATGTTGAAATGGCATTTTTCCAGAGATGGTGGAGGCAGCAAAGTAAAGCTATGAAACTTAAAGTCAAAGAGCTTGTCAACTCGGGTCAGCTCGAATTCATAAATGGTGCTATGTGCATGCATGATGAGGCCACCCCTCATTATATTGACCTGATTGATCAGACCACTCTTGGGCATCAGTTCATCAAAGATGAGTTTGGCAAGATTCCAAGAGTTGGCTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCATACTTGCTTGGAGCTGAGCTAGGATTCGATTCCCTCTTTTTTGCTAGAATCGATTACCAAGATAGAGCCGAGCGATTAAAGGACAAAACTCTAGAGATTGTTTGGCAGGGTTCTAAGTCTCTGGGTTCATCTTCACAAATATTTACTGGGATATTTCCCAGGCATTATGACCCTCCTGATGGTTTCACGTTTGAGGTACATGATGTGTCCTCTCCTATTCAGGATGACATTCTATTGTTTGACTATAATGTTGAAGAAAGAGTCAATGACTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAGGACGAATCACATAATGTGGACAATGGGGACAGACTTCCGCTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGTCGAGTCAATGCATTGTATTCAACACCATCTATCTACACTGATGCAAAACATGCAGCTAATGAGCAATGGCCACTTAAAATTGATGATTTCTTCCCGTATGCTGATCATCCTAATGCATATTGGACTGGTTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGAGTAATGAGTGGTTACTACCAGGCCGCAAAGCAGTTGGAATTGTTTAAAGGGAGAAATGAATCAGGACCAAATACTGATGCATTAGCTGATGCTTTAGCACTTGCTCAGCACCATGATGCTGTTAGTGGCACAGAAAGACAGCATGTTGCTGCTGATTATGCAAAGCGGATCTCAATAGGCTACGCCGAGGCAGAAGGCTTGGTTGCATCTGCTCTTGCTTTATTGGTAAACCAAAGATTGAGTTCACATATGATGAACCCGGTAGCAGGCTTCCAGCAGTGCCCTCTTCTTAACATAAGCTACTGTCCTCCGTCAGAAACTATCTTGGCTAATGGGAAAAACATGGTTATTGTTGTTTATAACCCTCTTGCTTGGAAGAGAGAGGATGTAATTCGAATTCCTGTTTCCACTTCAGAAGTTTTTGTCCAGGACTCTGCTGGGAAGGAAATTGAGTCTCAGCTTTTGCCTCTATCTAATATTACTTCGAGCATAAGGAAAAAATACGTCAAAGCATATATAGGAACACCTCCTGCTGGGGAACTCAAGTACTGGCTTGCATTTCCGGTATCTGTACCCCCCATTGGTTTCAGCACCTATGTAGTATCAAGGCCTAAACAGTCTGGTCATGTTTCAATTATCTCAAAGGAGTTCAGATCAGATGGAAGTACTAATGATAGTATAGAAGTTGGACAAGGGAATCTAAAGCTTCTATATTCTGCAAATGAAGGAAAATTGACTCATTATGTTAACAGTAGAAATCAAGTTACAGCATCAGTTGAACAATCATACAGTTTTTATTCTGGAAATATTGGGGATGATAAAGATTCTCAGGCTTCTGGGGCATATGTCTTCCGTCCAAATGGCTCGTTTCCTATTAAATCTGATCAGCAGGCATCTTTTACTGTCTTGCGTGGTCCGATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCTCAGATTACGAGGATATATAAGGCAAAGGAGCATGCTGAAGTTGAGTTCACAATTGGGCCTATACCTGTGGATGATGGCATTGGGAAAGAACTTATTACTCAATTTTCAACTACAATGAAGACAAACAAGACATTCTACACAGATTCTAATGGACGTGACTTCATCAAAAGGATTCGAGATTTCAGGACTGACTGGGATCTAGAAGTGAACCAACCTGTAGCTGGAAATTATTACCCGGTTAATTTAGGAATATATATGCAAGATAGCGGTATGGAACTCTCAGTTTTGGTGGACCGCTCAGTTGGTGGTTCTAGTTTGGTAGATGGTCAAGTAGAGCTGATGCTTCACAGGAGGATGCTTCATGATGATGCAAGAGGTGTTGGAGAGATACTTAATGAAACTGTTTGCATTGCTGATAAATGCGAAGGCTTAACTATTCAAGGAAAACTGTACCTTAGAATTGACCTTAAAGATGAAGGTGCTAAATGGCGGCGTACAGTTGGCCAGGAATTATATTCACCATTGTTATTGGCTTTCACAGAGCAGGATGAGGATAATTGGTTGCATTTTCAACAATCAACATTTTCTGCTATAGACTCTTCTTACAGTTTACCAAACAACACCGCACTTCTAACTCTCCAGGATTTTGGAAACGGAAAAGTACTCCTAAGACTGGCTCACCTTTATGAGATTGGAGAGGACAAAGACTATTCGGTAACTGCAAATGTAGAATTGAAAAGGCTTTTCCCTAATAAGAAGATAAGTAAAGTGACAGAGATGAGTTTATCTGCTAATCAAGAAAGAAGTGAAATGGAAAAGAGGAAACTAGTTTGGAAGGTAGAAGGAGGCTTCACTGAAGAATCTAAGGTGGTGAGAGGAGGACCTGTTGATCCTACAAAGCTTGTTGTTGAACTTGCTCCAATGGAGATTCGGACATTCTTTGTTGACTTTGATCCCCTGCAAACAGCACATGCAGCAGAAACTCATGTAGCAATGTAA 3078 0.4149 MMITADTVVLFAVLAMALCIVKSDYIEYNTSHRIVPNKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNVLDSVMSALLEDQNRKFIYVEMAFFQRWWRQQSKAMKLKVKELVNSGQLEFINGAMCMHDEATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAERLKDKTLEIVWQGSKSLGSSSQIFTGIFPRHYDPPDGFTFEVHDVSSPIQDDILLFDYNVEERVNDFVSAALAQANVTRTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKHAANEQWPLKIDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSGYYQAAKQLELFKGRNESGPNTDALADALALAQHHDAVSGTERQHVAADYAKRISIGYAEAEGLVASALALLVNQRLSSHMMNPVAGFQQCPLLNISYCPPSETILANGKNMVIVVYNPLAWKREDVIRIPVSTSEVFVQDSAGKEIESQLLPLSNITSSIRKKYVKAYIGTPPAGELKYWLAFPVSVPPIGFSTYVVSRPKQSGHVSIISKEFRSDGSTNDSIEVGQGNLKLLYSANEGKLTHYVNSRNQVTASVEQSYSFYSGNIGDDKDSQASGAYVFRPNGSFPIKSDQQASFTVLRGPILDEVHQQLNPWVSQITRIYKAKEHAEVEFTIGPIPVDDGIGKELITQFSTTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLEVNQPVAGNYYPVNLGIYMQDSGMELSVLVDRSVGGSSLVDGQVELMLHRRMLHDDARGVGEILNETVCIADKCEGLTIQGKLYLRIDLKDEGAKWRRTVGQELYSPLLLAFTEQDEDNWLHFQQSTFSAIDSSYSLPNNTALLTLQDFGNGKVLLRLAHLYEIGEDKDYSVTANVELKRLFPNKKISKVTEMSLSANQERSEMEKRKLVWKVEGGFTEESKVVRGGPVDPTKLVVELAPMEIRTFFVDFDPLQTAHAAETHVAM 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03297 1025 CDD GH38N_AMII_LAM_like 39 315 - -
Vivi6g03297 1025 Gene3D - 599 866 - -
Vivi6g03297 1025 SUPERFAMILY Galactose mutarotase-like 456 1010 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi6g03297 1025 FunFam Alpha-mannosidase 318 398 - -
Vivi6g03297 1025 SUPERFAMILY Glycoside hydrolase/deacetylase 28 354 IPR011330 GO:0005975
Vivi6g03297 1025 FunFam Alpha-mannosidase 39 319 - -
Vivi6g03297 1025 Gene3D Glycoside hydrolase 38, N terminal domain 39 319 IPR027291 -
Vivi6g03297 1025 PANTHER ALPHA-MANNOSIDASE 11 1010 - -
Vivi6g03297 1025 FunFam Alpha-mannosidase 399 454 - -
Vivi6g03297 1025 Pfam Glycosyl hydrolases family 38 N-terminal domain 40 351 IPR000602 GO:0004559|GO:0006013
Vivi6g03297 1025 Pfam Alpha mannosidase middle domain 356 448 IPR015341 GO:0004559|GO:0006013
Vivi6g03297 1025 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 901 1007 IPR041147 -
Vivi6g03297 1025 FunFam Alpha-mannosidase 476 601 - -
Vivi6g03297 1025 Gene3D Glycoside hydrolase family 38, central domain 399 453 IPR037094 GO:0004559|GO:0006013
Vivi6g03297 1025 SMART Alpha_mann_mid_2 356 430 IPR015341 GO:0004559|GO:0006013
Vivi6g03297 1025 FunFam Alpha-mannosidase 886 1012 - -
Vivi6g03297 1025 Gene3D - 473 594 IPR013780 -
Vivi6g03297 1025 Gene3D - 885 1012 - -
Vivi6g03297 1025 FunFam Alpha-mannosidase 601 866 - -
Vivi6g03297 1025 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 818 IPR011682 GO:0004559|GO:0006013
Vivi6g03297 1025 SUPERFAMILY Families 57/38 glycoside transferase middle domain 355 450 IPR028995 -
Vivi6g03297 1025 Gene3D Glycoside hydrolase family 38, central domain 320 398 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03297 Vivi-Chr6 123793772 123803131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03297 10 949 Glycoside Hydrolase AT3G26720 72.476 0.0 1459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03297 K01191 - gmx:100795651 1778.84