Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01877 ATGATAACGGCCGATACGACGGTGCTATTCGCCGTTTTGATGACTGCGGTATATGCAGTGCAATCGGAGTACATAGAGTACAACACCACACACAGAATCGTCCCCAACAAAATCAATGTTCACTTGGTTCCTCACTCCCACGATGATGTTGGTTGGCTTAAAACCGTCGATCAGTACTACGTCGGATCCAACAACTCCATTCGTGGTGCATGTGTGCAGAACGTGCTTGATTCTGTGATGTCCTCACTTTTGGAGGATCAAAATCGCAAGTTTATATATGTTGAAATGGCATTTTTCCAGAGATGGTGGAGACAGCAAAGTAAAGCTATGAAACTTAAAGTCAAAGAGCTTGTCAACTCGGGTCAACTCGAATTCATAAATGGTGCTATGAGCATGCATGATGAGGCCACCCCTCATTACATTGACCTGATTGATCAGACCACTCTGGGGCATCAGTTCATCAAAGATGAGTTTGGTAAGATTCCAAGAGTTGGCTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCATACTTGCTTGGAGCTGAGCTAGGATTCGATTCCCTCTTTTTTGCTAGAATCGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAAAACTCTAGAGATTGTTTGGCAGGGTTCCAAGTCTCTTGGTTCATCTTCACAAATATTTACTGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACGTTCGAGGTACATGATGTTTCCTCTCCTATTCAGGATGACATTCTACTGTTTGACTATAATGTTGAAGAAAGAGTCAATGACTTTGTATCTGCTGCCTTAGCTCAGGAGCCTTTTGACTCCATGGCTTTGTTTGGGAAATGGGCTTTGGAGGGTATGGGGGAGGCTATTGAAAAGGTAGACCTTTGTTTGGGAGTTTTTAAAATTAAGCAGAATGGTTTTGGATTTTCACCCAATGCCCCTCCCAAACAGACCCTGAAGAATGATTAA 990 0.4343 MITADTTVLFAVLMTAVYAVQSEYIEYNTTHRIVPNKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNVLDSVMSSLLEDQNRKFIYVEMAFFQRWWRQQSKAMKLKVKELVNSGQLEFINGAMSMHDEATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEIVWQGSKSLGSSSQIFTGIFPRHYDPPDGFTFEVHDVSSPIQDDILLFDYNVEERVNDFVSAALAQEPFDSMALFGKWALEGMGEAIEKVDLCLGVFKIKQNGFGFSPNAPPKQTLKND 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01877 329 Gene3D Glycoside hydrolase 38, N terminal domain 38 285 IPR027291 -
Vifa5g01877 329 SUPERFAMILY Glycoside hydrolase/deacetylase 27 278 IPR011330 GO:0005975
Vifa5g01877 329 Pfam Glycosyl hydrolases family 38 N-terminal domain 39 275 IPR000602 GO:0004559|GO:0006013
Vifa5g01877 329 PANTHER ALPHA-MANNOSIDASE 11 276 - -
Vifa5g01877 329 FunFam Alpha-mannosidase 38 284 - -
Vifa5g01877 329 CDD GH38N_AMII_LAM_like 38 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01877 Vifa-Chr5 545342302 545344421 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01877 9 276 Glycoside Hydrolase AT3G26720 85.130 1.98e-165 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01877 K01191 - gmx:100795651 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01877 5 545342302 545344421 Vifa5g01877 5 545342302 545344421 ECH