Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03374 ATGGCCAATCTGGCGGTGCTATTCGCCGTTTTGGTGGCGTCAATTTCTGTAGCGGAATCGGAGTACATAGAGTACAACACCACGCAGAGAATCGTCCCTGACAAAATCAACGTGCATTTGGTGCCTCACTCCCATGATGATGTTGGGTGGCTCAAGACCGTGGATCAGTACTACGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTGCAGAATGTGCTAGATTCTATGATATCCGCGCTCTTGGAGGACAAGAATCGCAAGTTTATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGACAGCAAAGTAAAGCTAAGAAAATTAAAGTCAAGGAGCTTGTCAACTCGGGTCAGCTGGAATTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACCCCACATTACATTGACCTAATTGATCAGACCACTCTTGGGCATCAATTCATCAAAGAGGAATTTGGTCAGATTCCAAGAGTTGGCTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGCGCCGAGCTAGGATTCGATTCACTCTTCTTTGCTAGAATTGATTACCAAGATAGAGCCAAACGATTAAAGGAGAAGACTCTGGAGGTTGTTTGGCAGGGTTCCAGGTCTCTTGGTTCTTCTTCACAAATATTCACTGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACGTTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTACTGTTCGACTATAATGTTGAAGAAAGAGTCAATGACTTTGTATCTGCTGCCTTAGCCCAGGCTAATGTGACTAAAACAAATCACATTATGTGGACAATGGGGACAGACTTCCGTTACCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGACGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTAATGAGCAATGGCCTCTTAAAATTGATGATTTCTTCCCGGAGGAAGTAATTCGAATTCCTGTTTCCACTGGAGAGGTTTTTGTCCAGGATTCTGCTGGGAAAGAAATTGAGTCTCAACTTCTGCCTCTATCTAATGCTACTTTGAGCATAAGAAACAATTATGTCAAAGCATATATAGGAAAAGCTCCTGCTGGGGAACTCAAGTATTTGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAGCACCTATATAGTGTCAAGGCCTAAACAGACAGACTTTTCAAATGATAAAGGTCTTAGTTCAACTATCTCAAAGGTGTACCGATCAGAAGGAAATACAAATAATAGCATAGAAGTTGGACAAGGGAATCTAAAGCTACTTTATTCTGCAGATGAGGGAAAACTGACTCATTATGTTAACAGTAGAAATCAGGTTACAGCATCGGTTGAACAATCATACAGTTATTATTCTGGAAATGATGGGACTGATAAAGATCCTCAGGCCTCTGGGGCATATGTCTTCCGTCCAAATGGCTCATTTCCCATTAAGTCTGATCACCAGGTATCTTTTACTGTCCTGCGAGGTCCAATATTGGATGAAATACATCAGCAGCTCAGCCCATGGGTATCTCAGATCGTGAGAATATATAAGGCAAAGGAGCATGCAGAGGTTGAGTTCACAATTGGGCCGATACCTGTGGATGATGGCATTGGCAAAGAAGTTATTACTCAATTTACAACTACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGGCGTGACTTCATTAAAAGGATTCGAGATTTCAGGACAGACTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTACCCCGTTAATTTAGGAATTTATGTGCAAGACACTTCTATGGAACTCTCAGTGTTGGTGGACCGCTCAGTTGGGGGTTCCAGTTTGGCAGATGGCCAAATAGAGCTGATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTTGGTGAGACACTCAACGAAACTGTTTGCACTGCTGATATCTGTGAAGGCTTAACCATTCAAGGAAAACTATACCTTAGAATTGACCGTATAGGTGAAGGTGCTAAATGGCGCCGTACAGTTGGCCAGGAATTGTATTCACCATTGTTGTTGGCCTTCACAGAACAGGATGGGGATAATTGGTCGCACTTCCAACCATCAACATTTTCTGGCATGGATTCTTCCTACAGTTTACCAAACAACACTGCTCTTTTAACCCTCCAGGAATTTGGAAATGGAAAAGTACTCCTAAGATTGGCCCACCTTTATGAGGTTATCGGAGAGGACAAAGATTACTCAGTAACGGCAAGTGTGGAATTGAAAAAGCTGTTTCCTAACAAGAAGATAAGTAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAAATTAGTCTGGAAGGTAGAAGGCTCCACTGAAGAACCTAAGGTGGTGAGGGGAGGACCTGTTGATCCTACAAAGCTGGTGGTTGAACTTGCTCCAATGGAGATTCGGACATTTTTTATTGACTTTAATCCCATCCAAACTCCTGCAACCCTTTTGGGAATACTCTTTTGTGGGCAATCAAAGTTTATGGTGTATAACACCTCTCAGGGCATAGTCCCTGGGAAGCTCAATGTTCATCTGGTTGCTCATACCCACGATGATGTTGGGTGGTTGAAGACGGTTGATCAGTACTACGTTGGTTCTAATAATTCTATTCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCCATGGTTCATGCTCTGTTGGCTGACAAGAACCGAAAATTTATCTACGTTGAGATAGCCTTTTTCCAGCGATGGTGGAGAGATCAGAGTGAAGCTGTTCAGAATGTAGTTAAGCAACTTGTTAGTTCGGGTCAACTAGAATTCATAAATGGAGGCATGTGTATGCATGATGAGGCAGTAACTCATTACATAGACATGATTGATCAGACTACACTTGGACATCGGTTTTTGAAAGAGAACTTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTGCAGGCTTATTTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGATTACCAAGATAGAGCTAAACGCAAAAAGGAGAAGAGTCTCGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCATCTGCCCAGATATTTGCTGGTGCATTCCCTGAGAATTATGAGCCTCCTTCTGGATTTTACTTTGAAGTTAATGACAACTCACCAATAGTTCAAGATAACATGGATTTGTTTGATTACAATGTCCAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATCACAGGCAAATATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAATATCAATATGCACATACATGGTTCCGACAGATGGACAAGCTTATTCATTATGTGAACAAGGATGGACGTGTCAATGCTCTATACTCTACGCCATCCATATATACTGATGCAAAATATGCTACAAATGAGTCCTGGCCAATCAAGACGAATGATTTCTTCCCTTATGCAGATCGTGCAAATGGTTACTGGACAGGATACTTTACCAGTAGGCCATCTATCAAACTCTATGTCAGATTAATGAGCGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGGGGGAGAATGAACTCAGGGCCAAATACAGACTCATTAGCAGATGCTTTAGCAATTGCTCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTAGCCAATGATTATTCCAAACGATTGTCAATAGGATACAACGAGGCAGAGGAATTGGTTTCATCATCACTGGCTTGCTTGGCTGAGTCAACATTGCTTACTAGATGTCAGAACCCAGTTACAAAGTTTAAACAATGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATCTGGTTCAAGGAAAGAGTTTGGTTATTGTGGTTTACAATGCCCTTGGTTGGAAGCGGAATGAAGTGATTCGGATTCCTGTTATTGATGGCAATGTTACAGTTCATGACTCTAATGGTAAAGAAATAGAATCTCAACTTCTTCCTCAGGCTGAAGTATATGTAGACTTAAGAAACTACTATGTCAAGGCATATTTGGGACAAACTCCACCCAAGACACCCAAGTACTGGCTTGCATTTACAGTTTCTGTACCACCACTTGGTTTTAGCACCTACACTGTCTCAACTGCTAAAAGGACAGGTTCCACCAGATCATCAATACATGCATATCAAAGTAGTGAAAAGTCTAGATTTGAAGTTGGTCAAGGAAATTTGAAGCTTATATTTTCTACGGATCAAGAAAAATATACCAATTATGTCAATATAAGAAGCTCGGTTGAGGAACAAGTTGAACTGAGTTACCTTTACTATTCAGGATATAATGGAACTAATCAAAAAGATCCACAGAATTCTGGGGCCTATATCTTCCGTCCAAATGGAACATATCCCATAAACCATGAAAGAAAGGTTCCAGTGACTGTTCTGCATGGACCTGTACTAGATGAAGTACATCAACGAATCAATCCATGGATATATCAGATTACCAGACTACACAAAGGAAAGGAGCATGTTGAAGTAGAGTTTATTGTTGGCCCTATACCTATCGAAGATGGAATTGGTAAAGAAGTTGCCACTCAAATTTCAACTACTATGGAAACCAACAAAACATTTTACACAGATTCAAATGGGCGTGATTTTATCAAAAGGATACGTGACTATAGAACAGACTGGGACCTGGAAGTGAACCAGCCCATTGCTGGAAATTATTACCCTATTAACCTCGGGATATACATAAAGGATAATAGGACAGAGTTCTCAGTTTTGGTAGATAGATCCATCGGAGGATCCAGCTTAGAAGATGGACAAATAGAGCTGATGGTCCACAGGAGATTGCTACTTGATGATTCAAGAGGTGTTGCAGAAGCTCTAAATGAAACAGACTGCGTTGCTGACGATTGCAGGGGTCTAACTGTCCAAGGTAAATATTACTATAGAATAGATCTCTTGGGTGAGGGTGCTAAGTGGCGTCGTACTTTTGGCCAGGAAATATATTCTCCACTTCTGTTAGCCTTTTCTGAAAAGGATAAAGATGACTGGATGAATTCCCATGTACCAACATTTTCAGGAATTGACTCTTCCTACACGTTACCTGATAATGTTGTTATTATAACGCTACAGGAACTTGACAATGGGGAAGTTCTTCTTCGGTTAGCACATTTATATGAGATTGAAGAAGACAAGGATCTCTCTGTAATGGCGAGTGTGGAGCTGAAAAAGCTCTTCCCTGGGAAGAAGATCAAAGAGGTGAAAGAGATGAACTTATCTGCCAATCAAGAAAGGACAGAGATGGAGAGAAAAAAGCTTGCTTGGAAAATAGAAGGCTCCTCTGGAAATGGATTTGTTTCAAGGGGAGGGCCAGTTGATCCAAAAGAGCTAGATGTGGAGCTTGCTCCAATGGAAATCCGCACTTTTATCATTTACTTTGATTATAACCATCTTTTTGAGTCGTTGTAA 5625 0.4144 MANLAVLFAVLVASISVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSMISALLEDKNRKFIYVEMAFFQRWWRQQSKAKKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGQIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVVWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVEERVNDFVSAALAQANVTKTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEQWPLKIDDFFPEEVIRIPVSTGEVFVQDSAGKEIESQLLPLSNATLSIRNNYVKAYIGKAPAGELKYLLAFPVSVPPLGFSTYIVSRPKQTDFSNDKGLSSTISKVYRSEGNTNNSIEVGQGNLKLLYSADEGKLTHYVNSRNQVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFPIKSDHQVSFTVLRGPILDEIHQQLSPWVSQIVRIYKAKEHAEVEFTIGPIPVDDGIGKEVITQFTTTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDTSMELSVLVDRSVGGSSLADGQIELMLHRRLLHDDARGVGETLNETVCTADICEGLTIQGKLYLRIDRIGEGAKWRRTVGQELYSPLLLAFTEQDGDNWSHFQPSTFSGMDSSYSLPNNTALLTLQEFGNGKVLLRLAHLYEVIGEDKDYSVTASVELKKLFPNKKISKVTEMSLSANQERAEMEKKKLVWKVEGSTEEPKVVRGGPVDPTKLVVELAPMEIRTFFIDFNPIQTPATLLGILFCGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEIAFFQRWWRDQSEAVQNVVKQLVSSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFLKENFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPSGFYFEVNDNSPIVQDNMDLFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKYATNESWPIKTNDFFPYADRANGYWTGYFTSRPSIKLYVRLMSGYYLAARQLEFFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYNEAEELVSSSLACLAESTLLTRCQNPVTKFKQCPLLNISYCPASEVDLVQGKSLVIVVYNALGWKRNEVIRIPVIDGNVTVHDSNGKEIESQLLPQAEVYVDLRNYYVKAYLGQTPPKTPKYWLAFTVSVPPLGFSTYTVSTAKRTGSTRSSIHAYQSSEKSRFEVGQGNLKLIFSTDQEKYTNYVNIRSSVEEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTYPINHERKVPVTVLHGPVLDEVHQRINPWIYQITRLHKGKEHVEVEFIVGPIPIEDGIGKEVATQISTTMETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNQPIAGNYYPINLGIYIKDNRTEFSVLVDRSIGGSSLEDGQIELMVHRRLLLDDSRGVAEALNETDCVADDCRGLTVQGKYYYRIDLLGEGAKWRRTFGQEIYSPLLLAFSEKDKDDWMNSHVPTFSGIDSSYTLPDNVVIITLQELDNGEVLLRLAHLYEIEEDKDLSVMASVELKKLFPGKKIKEVKEMNLSANQERTEMERKKLAWKIEGSSGNGFVSRGGPVDPKELDVELAPMEIRTFIIYFDYNHLFESL. 1875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03374 1874 FunFam Alpha-mannosidase 1333 1457 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 1742 1867 - -
Seca2g03374 1874 Gene3D - 1456 1722 - -
Seca2g03374 1874 Gene3D - 451 718 - -
Seca2g03374 1874 CDD GH38N_AMII_LAM_like 896 1172 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 1456 1722 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 36 316 - -
Seca2g03374 1874 Gene3D Glycoside hydrolase 38, N terminal domain 10 347 IPR027291 -
Seca2g03374 1874 FunFam Alpha-mannosidase 1256 1310 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 1175 1255 - -
Seca2g03374 1874 Gene3D - 738 864 - -
Seca2g03374 1874 Gene3D - 1742 1870 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 344 453 - -
Seca2g03374 1874 SUPERFAMILY Galactose mutarotase-like 1311 1865 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca2g03374 1874 FunFam Alpha-mannosidase 738 864 - -
Seca2g03374 1874 CDD GH38N_AMII_LAM_like 36 312 - -
Seca2g03374 1874 SUPERFAMILY Glycoside hydrolase/deacetylase 25 346 IPR011330 GO:0005975
Seca2g03374 1874 PANTHER ALPHA-MANNOSIDASE 7 346 - -
Seca2g03374 1874 FunFam Alpha-mannosidase 896 1176 - -
Seca2g03374 1874 SUPERFAMILY Galactose mutarotase-like 347 862 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 346 IPR000602 GO:0004559|GO:0006013
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 N-terminal domain 897 1208 IPR000602 GO:0004559|GO:0006013
Seca2g03374 1874 SMART Alpha_mann_mid_2 1213 1287 IPR015341 GO:0004559|GO:0006013
Seca2g03374 1874 SUPERFAMILY Families 57/38 glycoside transferase middle domain 1212 1306 IPR028995 -
Seca2g03374 1874 SUPERFAMILY Glycoside hydrolase/deacetylase 885 1209 IPR011330 GO:0005975
Seca2g03374 1874 Gene3D Glycoside hydrolase family 38, central domain 1256 1310 IPR037094 GO:0004559|GO:0006013
Seca2g03374 1874 Gene3D Glycoside hydrolase 38, N terminal domain 896 1176 IPR027291 -
Seca2g03374 1874 Coils Coil 1803 1823 - -
Seca2g03374 1874 Gene3D Glycoside hydrolase family 38, central domain 1177 1255 IPR037094 GO:0004559|GO:0006013
Seca2g03374 1874 Pfam Alpha mannosidase middle domain 1214 1305 IPR015341 GO:0004559|GO:0006013
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 753 859 IPR041147 -
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 1756 1862 IPR041147 -
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 C-terminal domain 456 670 IPR011682 GO:0004559|GO:0006013
Seca2g03374 1874 Pfam Glycosyl hydrolases family 38 C-terminal domain 1459 1674 IPR011682 GO:0004559|GO:0006013
Seca2g03374 1874 Gene3D - 348 449 IPR013780 -
Seca2g03374 1874 Gene3D - 1333 1455 IPR013780 -
Seca2g03374 1874 FunFam Alpha-mannosidase 453 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03374 Seca-Chr2 103510830 103545988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03374 348 775 Glycoside Hydrolase AT5G13980 59.259 1.18e-169 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03374 K01191 - gmx:100776282 1831.22