Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00257 ATGGCTGAACCCACCATTCCTCATTTTCAGAATCTAATGGCGAAAAAATTGTTTTTTTTGTTGACCCTTTTGGAAATACTCCTTTGTGGGCAATCCAAGTTTATGGTCTACAACACCTCCCAGGGCATAGTCCCTGACAAGCTCAATGTTCATCTGGTAGCTCATACCCATGATGATGTTGGATGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCTATGGTGCATGCGCTGTTGGCTGACAAGAACAGAAAGTTTATCTATGTTGAGATGATTAATGTTCCTTCTACAGCATTTTTCAAACGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGAAGTTGTTAAGAAACTCGTTAGTTCCGGTCAACTAGAGTTCATAAATGGTGCCATGTCTATGCATGACGAGGCAGTAACACATTACATAGACATGATTGATCAGACTGCACTTGGACATCAATTTCTAAAAGAGGAATTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCTTTTGGACATTCTGCTGTGCAGGCTTACCTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGATTACCAAGATAGGGTTAAGCGCAAAAAGGAGAAGAGTCTGGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCCTCTGCCCAGATATTTGCTGGAGCATTCCCTGAAAATTATGAGCCACCTTCAGGATTTTACTTTGAAGTTAATGATAACTCACCAATAGTTCAAGATAACATGGAATTGTTTGATTACAATGTCCAAGAACGAGTTAATGACTTTGTTGCTGCTGCATTATCCCAGGCAAACATAACCCGAACAAATCATATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACGTGGTTCCGGCAGCTGGACAAGCTCATTCATTATGTAAACAAGGATGGACGTGTCAATGCTTTGTACTCTACCCCATCCATATATACTGATGCAAAATATGCTACAAGTGAATCCTGGCCAATCAAGACTGATGATTTCTTCCCTTATGCAGATCGTGCAAATGGTTACTGGACAGGATACTTTACCAGTAGACCAGCCATCAAACGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTGGAGTATTATAGGGGGAGAGTGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCGCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCCAATGATTATTCTAAACGGTTGTCAATAGGCTACAAGGAGGCCGAGGAGTTGGTTTCATCATCGCTGGCTTGCTTGGTTGAGTCCCCATTGCATTCTAGATGTCAAAATCCAGTTACAAAGTTTCAACAATGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTAATCTGGTTCAAGGGAAGAATTTGGTCATTCTTGCTTACAATGCTCTTGGTTGGAGGAGGAACGAAGTGATTCGAATTCCGGTTAATGAGGCCAATGTTAGAGTTCAGGACTCTAATGGTATTGAAATAGAATCTCAACTTCTTCCTCAGGCTGAGAAATATGTAGACTTAAGAAATTACTATGTGAAGGCATATTTGGGACAAGCTCCACCCAAGACACCGAAATATTGGCTTGCATTTACAGTTTCTGTACCACCACTTGGTTTTAGCACCTACACTATCTCAACTGCCAAACGGAAAGGATCCACTAGATCATCAGTAGCTACATATAAAAGGAGTAAAAAGTCTAAATTTGAAGTTGGTCAAGGAAATTTGAAGCTTAAATTTTCTGCGGATCAAGAGAAGTGTACCAATTATGTTAATATAAGAAACCTGGTTGAGGAACAGGTTGAACTAAGTTACCTTTACTATTCTGGATACAATGGAACTAATCAAAAGGATCCACAGAATTCTGGGGCCTATATCTTCCGTCCAAATGGCACATATCCCATAAACCATGAAAAAAAGGTTCCATTGACTGTATTAAATGGACCAGTACTAGATGAAGTTCATCAACAAATCAATCCATGGATTTATCAGATTACCAGACTATACAAAGGAAAAGAGCATGTTGAAGTGGAGTTTATTGTTGGCCCTATACCAATTGAAGATGGAACTGGTAAAGAAGTTTCCACTCGGATTTCAACAACTATGGAAACAAACAAAACATTTTACACGGATTCCAATGGGCGTGATTTTATCAAAAGGATACGTGATTACAGAACAGACTGGGACCTGGAAGTGAACCAACCAGCTGCTGGAAATTATTACCCTATTAATCTCGGGATATACATGGAGGATAGTAAAACAGAATTCTCAGTTTTGGTGGATAGATCTATTGGAGGATCTAGCTTACAAGATGGACAAATAGAGCTCATGGTCCACAGGAGATTACTACTTGATGATTCAAGAGGTGTTGCAGAGGCTCTAAATGAAACAGATTGTGTTGGTGATGATTGCAGGGGTCTAACTGTCCAAGGTAAATATTACTACAGAATAGATCCCTTAGGCGAGGGTGCCAAGTGGCGACGTACTTTTGGCCAGGAAATATATTCTCCACTTCTGCTAGCCTTTGCTGAAAAGGATGATAAAGATGACTGGAGGAATTCCCATGTATTAACATTTTCAGGAATAGATTCTTCATACGCATTACCTGATAATATCGCTGTTATAACATTACAGGAACTTGAAGATGGGACGGTTCTCCTTCGGTTAGCACATTTATACGAGATTGAAGAAGACAAGGATCTCTCTGTAATAGCAACTGTTGAGCTGAAAAAGCTCTTCCCTGGGAGAAAAATCAAAGAGGTAAAGGAGATGAACTTATCTGCCAATCAAGAAAGAACAGAAATGGAGAAAAAAAGACTTGCTTGGAAAGTAGAAGGCTCTTCTGGAAATAGACATGTTTCAAGGGGAGGACCAGTTGATCCAAAAGAGCTGAAAGTGGAGCTTTCACCAATGGAAATTCGCACTTTTATCATTTATTTTGATGCTGTCTGA 3084 0.403 MAEPTIPHFQNLMAKKLFFLLTLLEILLCGQSKFMVYNTSQGIVPDKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMINVPSTAFFKRWWRDQSEAVQEVVKKLVSSGQLEFINGAMSMHDEAVTHYIDMIDQTALGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRVKRKKEKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPSGFYFEVNDNSPIVQDNMELFDYNVQERVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYATSESWPIKTDDFFPYADRANGYWTGYFTSRPAIKRYVRLMSGYYLAARQLEYYRGRVNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLACLVESPLHSRCQNPVTKFQQCPLLNISYCPASEVNLVQGKNLVILAYNALGWRRNEVIRIPVNEANVRVQDSNGIEIESQLLPQAEKYVDLRNYYVKAYLGQAPPKTPKYWLAFTVSVPPLGFSTYTISTAKRKGSTRSSVATYKRSKKSKFEVGQGNLKLKFSADQEKCTNYVNIRNLVEEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTYPINHEKKVPLTVLNGPVLDEVHQQINPWIYQITRLYKGKEHVEVEFIVGPIPIEDGTGKEVSTRISTTMETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNQPAAGNYYPINLGIYMEDSKTEFSVLVDRSIGGSSLQDGQIELMVHRRLLLDDSRGVAEALNETDCVGDDCRGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFAEKDDKDDWRNSHVLTFSGIDSSYALPDNIAVITLQELEDGTVLLRLAHLYEIEEDKDLSVIATVELKKLFPGRKIKEVKEMNLSANQERTEMEKKRLAWKVEGSSGNRHVSRGGPVDPKELKVELSPMEIRTFIIYFDAV 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00257 1027 SUPERFAMILY Glycoside hydrolase/deacetylase 37 367 IPR011330 GO:0005975
Spst1g00257 1027 Gene3D - 614 880 - -
Spst1g00257 1027 Gene3D Glycoside hydrolase family 38, central domain 335 413 IPR037094 GO:0004559|GO:0006013
Spst1g00257 1027 FunFam Alpha-mannosidase 614 880 - -
Spst1g00257 1027 Pfam Glycosyl hydrolases family 38 C-terminal domain 617 832 IPR011682 GO:0004559|GO:0006013
Spst1g00257 1027 FunFam Alpha-mannosidase 333 412 - -
Spst1g00257 1027 FunFam Alpha-mannosidase 48 334 - -
Spst1g00257 1027 SUPERFAMILY Galactose mutarotase-like 470 1024 IPR011013 GO:0003824|GO:0005975|GO:0030246
Spst1g00257 1027 Gene3D - 901 1026 - -
Spst1g00257 1027 FunFam Alpha-mannosidase 491 615 - -
Spst1g00257 1027 Coils Coil 962 982 - -
Spst1g00257 1027 CDD GH38N_AMII_LAM_like 48 330 - -
Spst1g00257 1027 Gene3D Glycoside hydrolase 38, N terminal domain 48 334 IPR027291 -
Spst1g00257 1027 PANTHER ALPHA-MANNOSIDASE 19 1025 - -
Spst1g00257 1027 Gene3D - 491 613 IPR013780 -
Spst1g00257 1027 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 915 1021 IPR041147 -
Spst1g00257 1027 Pfam Alpha mannosidase middle domain 372 463 IPR015341 GO:0004559|GO:0006013
Spst1g00257 1027 SMART Alpha_mann_mid_2 371 445 IPR015341 GO:0004559|GO:0006013
Spst1g00257 1027 FunFam Alpha-mannosidase 901 1026 - -
Spst1g00257 1027 Pfam Glycosyl hydrolases family 38 N-terminal domain 49 366 IPR000602 GO:0004559|GO:0006013
Spst1g00257 1027 SUPERFAMILY Families 57/38 glycoside transferase middle domain 370 464 IPR028995 -
Spst1g00257 1027 FunFam Alpha-mannosidase 413 469 - -
Spst1g00257 1027 Gene3D Glycoside hydrolase family 38, central domain 414 468 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00257 Spst-Chr1 3586751 3602074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00257 13 938 Glycoside Hydrolase AT5G13980 71.030 0.0 1387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00257 K01191 - gmx:100776282 1892.09