Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02042 ATGTGCATGCATGATGAGGCTACTCCGCATTACATTGACCTGATTGATCAGACCACTCTCGGCCATCAGTTCATCAAAGATGAGTTTGGTAAGATTCCAAGAGTTGGTTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGAGCTGAGCTAGGATTCGATTCGCTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAAAACTCTAGAGGTTGTTTGGCAAGGTTCCAGGTCTCTTGGCTCTTCTTCACAAATATTTACTGGGATATTTCCTAGGCATTATGATCCTCCCGATGGTTTCACATTTGAGATAAATGATGTTTCCCAACCTATTCAGGATGACATTCTACTGTTTGATTATAATGTTGAAGAAAGAGTCAATGACTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACTAGGACGAATCACATAATGTGGGAAATGGGAACCGACTTCCGTTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGTCGAGTCAATGCATTGTATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTAACGAGCAATGGCCACTTAAAACTGATGATTTCTTCCCGTATGCTGATCATCCAAATGCATATTGGACCGGTTATTTTACAAGTAGGCCAGCTTTAAAGGGTTACGTGAGAGTGATGAGTGGTTACTATCAGGCAGCAAGGCAATTGGAGTTTTTTAAAGGGAGGAATGAATCAGGACCAAATACCGATGCATTAGCTGATGCTTTAGCGCTTGCTCAGCACCATGATGCTGTTAGTGGCACAGAAAGACAACATGTTGCCGCTGATTATGCAAAGCGGATCTCGATAGGCTATGCTAAGGCAGAAGGCTTGGTTGCATCCGCACTTGCTTTATTGGTAAACCAAAGATCAAGTTCACACATAAAAAACTCGGTGACAGGCTTCCAGCAGTGCCCTCTTCTTAATATAAGCTACTGTCCTCCTTCAGAAGCTACCTTGGCTAATGGAAAAAGCATGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAGGAAGTAATTCGAATCCCTGTTTCCACAAGAGAGGTTTCTGTCCAGGATTCTTCTGGGAAGGAAATTGAGTCTCAGCTTCTGCCTCTATCTAATACTACTTTGAGCGTAAGAAAAAAATATGTCAAAGCATATATAGGAACAGCTCCTGCTGAGGAACTCAAATATTTGCTTGCATTTTCGGTATCTGTACCTCCCATTGGTTTCAGCACATATATAGTATCAAAGCCTAAACAGACAGGTCATATTTCAACTATCTCAAAGGAGTTCAGATCAGAAGGAAGTACCAATAATAGCATAGAAGTCGGACAAGGGAATTTAAAGCTACTTTATTCTGCAGATGAAGGAAAGTTGACTCATTATGTTAACAGCAGAAATCAAGTTACAGCATCAGTTGAACAATCATACGGTTTCTATTCTGGAAACATTGGGGATGATAAAGATTCTCAGGCTTCCGGGGCATACGTCTTCCGTCCAAATGGCTCGTTTCCCATTAAATCTGATCAGCAGACATCTTTAACTGTCCTGCGTGGTCCGATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCTCAGATTACGAGGATATATAAGGAAAAGGAGCATGCTGAAGTTGAGTTCACAATTGGGCCTATACCTGTGGATGATGGCATTGGGAAAGAAGTTATTACTCAATTTTCAACTACAGTGAAGACCAACAAGACGTTCTACACAGATTCAAATGGACGTGACTTTATTAAAAGGATTCGAGATTTCAGGACTGACTGGGATCTAGAAGTGAACCAACCCATCGCCGGAAACTATTATCCAGTTAATTTAGGAATATATGTGCAAGATAGAAGTACGGAACTCTCGGTCTTGGTGGACCGCTCAGTTGGGGGTTCCAGTTTGGTAGATGGTCAAATAGAGCTGATGCTCCACAGGAGGTTGCTTCATGATGATGTAAGAGGTGTTGGAGAGACACTTAATGAAACCGTTTGCATTGCTGATAAATGCGAAGGCTTAACCATTCAAGGAAAACTGTACCTTAGAATTGACCGTAAAGGTGAAGGTGCTAAATGGCGACGTACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACTGAGCAGGATGCGGATAATCAGTTGCATTTCCATCAACCAACATTTTCTGGCATTGATTCTTCCTACAGTTTACCAAACAACACCGCGCTTCTAACTCTTCAGGAATTTGGAAATGGAAAAGTACTCTTAAGACTGGCTCACCTTTATGAGGTTGGAGAGGACAAAGATTATTCTATAACCGCAAACGTAGAATTGAAAAAGCTTTTCCCTAACAAGAAGATAAGTAAAGTGACAGAAATGAATTTATCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAAATTAGTTTGGAAAGTAGAAGGAGGCTCTAGTGAAAAATCTAAGGTGGTGAGGGGAGGACCTGTTGATCCTACAAAGCTTATTGTTGAACTTGTTCCGATGGAGATTCGGACATTCTTTGTCGACTTTAATCCCCTCCAAACAGTTCATACAGAAGAAAATCATGTAGCAATGTAA 2688 0.4111 MCMHDEATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVVWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSQPIQDDILLFDYNVEERVNDFVSAALAQANVTRTNHIMWEMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEQWPLKTDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSGYYQAARQLEFFKGRNESGPNTDALADALALAQHHDAVSGTERQHVAADYAKRISIGYAKAEGLVASALALLVNQRSSSHIKNSVTGFQQCPLLNISYCPPSEATLANGKSMVIVVYNPLAWKREEVIRIPVSTREVSVQDSSGKEIESQLLPLSNTTLSVRKKYVKAYIGTAPAEELKYLLAFSVSVPPIGFSTYIVSKPKQTGHISTISKEFRSEGSTNNSIEVGQGNLKLLYSADEGKLTHYVNSRNQVTASVEQSYGFYSGNIGDDKDSQASGAYVFRPNGSFPIKSDQQTSLTVLRGPILDEVHQQLNPWVSQITRIYKEKEHAEVEFTIGPIPVDDGIGKEVITQFSTTVKTNKTFYTDSNGRDFIKRIRDFRTDWDLEVNQPIAGNYYPVNLGIYVQDRSTELSVLVDRSVGGSSLVDGQIELMLHRRLLHDDVRGVGETLNETVCIADKCEGLTIQGKLYLRIDRKGEGAKWRRTVGQELYSPLLLAFTEQDADNQLHFHQPTFSGIDSSYSLPNNTALLTLQEFGNGKVLLRLAHLYEVGEDKDYSITANVELKKLFPNKKISKVTEMNLSANQERAEMEKKKLVWKVEGGSSEKSKVVRGGPVDPTKLIVELVPMEIRTFFVDFNPLQTVHTEENHVAM 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02042 895 Coils Coil 817 837 - -
Trre13g02042 895 Gene3D Glycoside hydrolase family 38, central domain 190 268 IPR037094 GO:0004559|GO:0006013
Trre13g02042 895 SUPERFAMILY Glycoside hydrolase/deacetylase 2 224 IPR011330 GO:0005975
Trre13g02042 895 SMART Alpha_mann_mid_2 226 300 IPR015341 GO:0004559|GO:0006013
Trre13g02042 895 Gene3D - 469 736 - -
Trre13g02042 895 FunFam Alpha-mannosidase 346 471 - -
Trre13g02042 895 FunFam Alpha-mannosidase 471 736 - -
Trre13g02042 895 Pfam Alpha mannosidase middle domain 226 318 IPR015341 GO:0004559|GO:0006013
Trre13g02042 895 Gene3D - 336 447 IPR013780 -
Trre13g02042 895 FunFam Alpha-mannosidase 756 882 - -
Trre13g02042 895 Gene3D Glycoside hydrolase 38, N terminal domain 1 189 IPR027291 -
Trre13g02042 895 Gene3D - 755 882 - -
Trre13g02042 895 PANTHER ALPHA-MANNOSIDASE 1 881 - -
Trre13g02042 895 SUPERFAMILY Families 57/38 glycoside transferase middle domain 226 326 IPR028995 -
Trre13g02042 895 FunFam Alpha-mannosidase 269 324 - -
Trre13g02042 895 Pfam Glycosyl hydrolases family 38 C-terminal domain 474 688 IPR011682 GO:0004559|GO:0006013
Trre13g02042 895 Gene3D Glycoside hydrolase family 38, central domain 269 324 IPR037094 GO:0004559|GO:0006013
Trre13g02042 895 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 771 877 IPR041147 -
Trre13g02042 895 FunFam Alpha-mannosidase 188 268 - -
Trre13g02042 895 Pfam Glycosyl hydrolases family 38 N-terminal domain 1 221 IPR000602 GO:0004559|GO:0006013
Trre13g02042 895 SUPERFAMILY Galactose mutarotase-like 328 880 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02042 Trre-Chr13 17681098 17689047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02042 1 819 Glycoside Hydrolase AT3G26720 72.894 0.0 1291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02042 K01191 - gmx:100795651 1548.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02042 13 17681098 17689047 Trre13g02042 13 17681098 17689047 ECH