LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1683	ATGGCGAAATTTTTACTCTTTCTGGTGACCCTTTTGGGAGTACTCCTTTGTGGGCAATCCAAGTTCATGGTTTACAACACTTCGCAGGGCATAGTACCTGGGAAGCTCAACGTTCATCTTGTTGCTCATACCCATGATGATGTTGGGTGGTTGAAGACGGTTGATCAGTACTACGTTGGTTCTAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCCATGGTTGGTGCTCTGGTGGCCGACAAGAACCGAAAATTTATATATGTTGAGATAGCCTTTTTCCAGCGATGGTGGAGAGATCAGAGTGAAATTGTGCAGAATGTAGTTAAGAAACTTGTTACTTCGGGTCAACTGGAGTTCATAAATGGGGGCATGTGTATGCATGATGAGGCAGTAACTCATTACATTGACATGATTGATCAGACTACACTTGGACATCGGTTTCTGAAACAGGAGTTTGGTTTAACTCCTAGAATTGGTTGGCAAATTGACCCCTTTGGACATTCTGCTGTGCAGGCTTACTTGTTGGGAGCTGAAGTTGGATTCGACTCATTTTTCTTTGGTCGGATAGATTACCAAGACAGGGCTAAGCGCAAAAAGGAGAAGAGTCTCGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCGTCCGCCCAGATCTTTGCTGGTGCATTCCCTGAGAATTATGAGCCTCCCCCTGGTGGATTTTACTTTGAAGTTAATGATAACTCACCAATAGTTCAAGACAACATGGATTTGTTTGATTATAATGTCCAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATCACAGGCAAACATCACTCGTACAAATCACATAATGTGGACTATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTACCGACAATTGGACAAGCTTATTCATTATGTGAACCAGGATGGACGTGTCAATGCTCTGTACTCTACGCCATCCATATATACTGATGCGAAATATGCTACAAATGAGTCCTGGCCAACCAAGACCGATGATTTCTTCCCTTACGCAGATCGTGCAAATGGTTACTGGACAGGATACTTTACCAGTAGGCCAGCTGTCAAACGTTATGTCCGATTAATGAGTGGCTATTATTTGGCTGCCCGACAACTAGAATTTTTTAGAGGGAGAATGAAATCTGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCCCAACACCATGATGCAGTCACTGGCACGGAAAAGCAGCATGTGGCCAATGATTATTCTAAACGATTGTCAATAGGCTACAAGGAGGCAGAGGAGTTGGTTTCGTCATCACTGGCTAGCTTGGTTGAGTCGACATTGCTTACTAGGTCTCAGAATCCAGTTACCAAGTTTCAACAATGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATCTGGCTCAAGGAAAGAGTTTGGTTATTGTGGTTTACAACTCTCTTGGTTGGAGAAGAAATGAAGTGATTCAAATTCCGGTTATCAATGGCGATGTTACAGTTCATGACTCCAACGGTACACAAGTAGAATCTCAGCTTCTTCCTCAGGCAGAGGTATATGCAGACTTAAGAAACTACTATGTCAAGGCATACTTGGGACAAACTCCACCCAAGACACCCAAGTATTGGCTTGCATTTTCCGTATCTGTACCGCCACTTGGCTTTAGCACCTACACTGTCTCAACTTCCAAAAAGACAGGTTCCACCAGATCATTGGTATATACATATCAAAGTGGTGAAAAATCTAGATATGAAGTTGGTCAAGGAAATCTGAAGCTTACATTTTCTACAGATCAAGAAAAATATAACAATTATGTTAATATGAGAAACTTGGTTGACGAACAAGTTGATCTGAGTTACCTTTACTATTCAGGATATAACGGAACTGACCAAAAAGATCCACAGAATTCTGGGGCGTATATATTCCGTCCAAATGGCACATATCCGATAAACCATAAAGGACAGGTTCCAGTGACTGTTCTGCGCGGACCGATACTAGATGAAGTGCATCAGCAAATCAATCCATGGATATATCAGATTACCAGATTGCAGAAAGGAAGCGAGCATGTTGAAGTAGAGTTCATTGTTGGCCCTATACCTATTGAAGATGGAATTGGTAAAGAAGTTGCAACTCAGATTTCAACTTCTATGGAAACCAACAAAGTATTTTACACAGATTCTAATGGGCGTGATTTTATCAAAAGGATACGTGACTACAGAACAGACTGGGAGCTGGAAGTGAACCAGCCCATTGCTGGAAATTATTACCCTATTAATCTTGGCATATACATGAAGGATAATAAAACAGAATTCTCTGTTTTGGTGGATAGAGCTATCGGAGGATCTAGCTTACAAGATGGACAAATAGAGCTAATGGTCCACAGGAGACTGCTACTTGATGATTCAAGAGGTGTTGCAGAGGCCCTAAATGAAACAGACTGTGTTGCTGATGATTGCAGGGGTCTAACTGTCCAAGGCAAATATTACTATAGAATAGATCCCTTGGGAGAGGGAGCTAAGTGGCGCCGTACTTTTGGACAGGAAATATATTCTCCACTTCTATTAGCCTTTGCTGAAAAGGATGATAAAGATGACTGGATAAATACCCATGTAACAACATTTTCAGGAGTAGACTCTTCTTACACATTACCTGAAAACATTGTTATATTAACATTACAGGAACTTGAGAATGGGACAGTTCTCCTTCGGCTAGCGCATTTATATGAGATTGAAGAAGACAAGGATTTCTCTGTAATGACAAATGTGGAGCTGAAAAAAATCTTCCCTGGGAAGAAGATCAAAGAGGTGAAAGAGATGAACTTATCTGCCAATCAAGAAAGGACAGAGATGGAGAAGAAAAGACTTGTTTGGAAAGTAGAAGGCTCTTCTGGAAATGAACATGTCTCAAGGGGAGGGCCAGTTGATCCCAAAGAGCTAAATGTGGAGCTTGCTCCTATGGAAATCCGCACTTTCATCATTTACTTTGATGACGTGCCTAACCATCTTCTTGATGCATTGTAG	3057	0.4161	MAKFLLFLVTLLGVLLCGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVGALVADKNRKFIYVEIAFFQRWWRDQSEIVQNVVKKLVTSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFLKQEFGLTPRIGWQIDPFGHSAVQAYLLGAEVGFDSFFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPPGGFYFEVNDNSPIVQDNMDLFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWYRQLDKLIHYVNQDGRVNALYSTPSIYTDAKYATNESWPTKTDDFFPYADRANGYWTGYFTSRPAVKRYVRLMSGYYLAARQLEFFRGRMKSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLASLVESTLLTRSQNPVTKFQQCPLLNISYCPASEVDLAQGKSLVIVVYNSLGWRRNEVIQIPVINGDVTVHDSNGTQVESQLLPQAEVYADLRNYYVKAYLGQTPPKTPKYWLAFSVSVPPLGFSTYTVSTSKKTGSTRSLVYTYQSGEKSRYEVGQGNLKLTFSTDQEKYNNYVNMRNLVDEQVDLSYLYYSGYNGTDQKDPQNSGAYIFRPNGTYPINHKGQVPVTVLRGPILDEVHQQINPWIYQITRLQKGSEHVEVEFIVGPIPIEDGIGKEVATQISTSMETNKVFYTDSNGRDFIKRIRDYRTDWELEVNQPIAGNYYPINLGIYMKDNKTEFSVLVDRAIGGSSLQDGQIELMVHRRLLLDDSRGVAEALNETDCVADDCRGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFAEKDDKDDWINTHVTTFSGVDSSYTLPENIVILTLQELENGTVLLRLAHLYEIEEDKDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKVEGSSGNEHVSRGGPVDPKELNVELAPMEIRTFIIYFDDVPNHLLDAL*	1019

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1683	1018	SMART	Alpha_mann_mid_2	354	428	IPR015341	GO:0004559\|GO:0006013
	Lja1g1683	1018	CDD	GH38N_AMII_LAM_like	36	313	-	-
	Lja1g1683	1018	Pfam	Glycosyl hydrolases family 38 N-terminal domain	37	349	IPR000602	GO:0004559\|GO:0006013
	Lja1g1683	1018	Gene3D	Glycoside hydrolase family 38, central domain	397	451	IPR037094	GO:0004559\|GO:0006013
	Lja1g1683	1018	Gene3D	-	596	863	-	-
	Lja1g1683	1018	PANTHER	ALPHA-MANNOSIDASE	13	1009	-	-
	Lja1g1683	1018	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	898	1004	IPR041147	-
	Lja1g1683	1018	SUPERFAMILY	Glycoside hydrolase/deacetylase	25	350	IPR011330	GO:0005975
	Lja1g1683	1018	Pfam	Glycosyl hydrolases family 38 C-terminal domain	600	815	IPR011682	GO:0004559\|GO:0006013
	Lja1g1683	1018	Gene3D	Glycoside hydrolase 38, N terminal domain	36	317	IPR027291	-
	Lja1g1683	1018	PANTHER	ALPHA-MANNOSIDASE	13	1009	-	-
	Lja1g1683	1018	Gene3D	-	883	1010	-	-
	Lja1g1683	1018	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	353	447	IPR028995	-
	Lja1g1683	1018	SUPERFAMILY	Galactose mutarotase-like	450	1007	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Lja1g1683	1018	Gene3D	-	474	594	IPR013780	-
	Lja1g1683	1018	Coils	Coil	945	965	-	-
	Lja1g1683	1018	Pfam	Alpha mannosidase middle domain	355	446	IPR015341	GO:0004559\|GO:0006013
	Lja1g1683	1018	Gene3D	Glycoside hydrolase family 38, central domain	318	396	IPR037094	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1683	Lja-Chr1	18558398	18570926	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1683	1	921	Glycoside Hydrolase	AT5G13980	72.894	0.0	1432

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1683	K01191		-	gmx:100776282	1814.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g1683	1	18558398	18570926	Lja1g1683	1	18558398	18570926	ECH