Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0875 ATGGGTGAAGCCACCATTCCTCATTTTCAGCAACTAATGGCGAAAAAATTGCTCTTTTTGTTGACCCTTTTGGAAATACTCCTCTGTGGACAATCCAAGTTTATGGTCTACAACACATCACAGGGCATAGTCCCTGGCAAGCTCAATGTTCATCTGGTAGCTCATACCCATGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCAATTCAGGGGGCTTGTGTGGAAAATGTGTTGGACTCTATGGTGCATGCGCTGCTGGCTGACAAGAATAGAAAGTTTATCTATGTTGAGATGGCATTTTTCAAGCGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGATGTTGTTAAGAAACTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGTGCCATGTCTATGCATGACGAGGCAGTTACACATTACATAGACATGATTGATCAGACTGCACTTGGACACCAATTTCTGAAAGAGGAATTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCTTTTGGACATTCTGCTGTGCAGGCTTACCTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTTTTTGGTCGGATAGATTACCAAGATAGGGCTAAGCGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCTTCTTCCCAGATCTTTGCTGGAGCGTTCCCTGAAAACTATGAGCCACCTTCAGGATTTTACTTTGAAGTTAATGATAACTCACCAATAGTTCAAGATAACATGGAATTATTTGATTACAATGTCCAAGAACGAGTGAACGACTTTGTTGCAGCTGCATTATCACAGGCAAACATAACTCGAACAAATCATATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGGCAGCTGGACAAACTCATTCATTATGTAAACAAGGATGGACGTGTTAATGCTCTGTACTCTACACCATCCATATATACTGATGCAAAATATGCTACAAACGAGTACTGGCCAATCAAGACTGATGATTTCTTCCCTTATGCAGATCGTGCAAACGGTTACTGGACAGGATACTTTACCAGTAGACCAGCTATCAAACGCTATGTCAGATTAATGAGTGGCTATTACTTGGCTGCAAGACAACTAGAATTTTTTAGAGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAACACCATGATGCAGTCACAGGCACAGAAAAGCAGCATGTTGCCAATGATTATTCTAAACGATTGGCAATAGGCTACAGGGAGGCAGAGGAACTGGTTTCATCATCGCTGGCTTGCTTGGTTGAGTCACCATTGCTTTCTAGATGTCAAAACCCAGTTCCAAAGTTTCAACAATGTCCACTTTTGAACATAAGTTATTGTCCAGCATCAGAAGTTGATCTGGTTCAAGGGAAGAATTTGGTCATTCTGGTCTACAACTCTCTTGGTTGGTGGAGGAATGAAGTGATTCGATTTCCGGTTACTGAGGCCAATGTTATAGTTCAGAACTCTGATGGTAAAGAAATAGAATCTCAACTTCTTCCTCAAGCTGAGAAATATTTAGACTTGAGAAACTACTATGTAAAGGCATATGTGGGACGAGCTCCACCCAAGTCACCCAAGTATTGGCTTGCATTTACAGTTTCTGTACCACCACTTGGTTTTAGCACCTACACTGTCTCAACTGCAAAAAAAACAGGATCCACTAGATCATCAGTAGCTACATATAAAAGTAGTGAAAAGTCTAAATTTGAAGTTGGTAAAGGAAATTTGAAGCTTAAATTTTCTACTGATCAAGAGAAGTGTACCAATTATGTTAATACAAGAGACAAGGTTGCGGAACAGGTTGAACTAAGTTACCTTTACTATTCTGGATACAATGGAACCAATCAAAAGGATCCGCAGAATTCCGGGGCCTATATCTTCCGTCCAAATGGCACATATCAAATAAACCATGAAAAAAAGGTTCCATTGACTGTTTTGAATGGACCGGTACTAGATGAAGTTCATCAACAAATCAATCCATGGATATATCAGATTACCAGACTATACAAAGGAAAAGAGCATGTTGAAGTGGAGTTTATCGTTGGCCCTATACCGATTGAAGATGGAACCGGTAAAGAAATTGCCACTCAGATTTCAACTACTATGGAAACCAACAAAACATTTTACACAGATTCTAACGGGCGTGATTTTATCAAAAGGATACGTGATTACAGAACTGACTGGGACCTGGAAGTGAACCAACCCGCTGCTGGAAATTATTACCCTATTAATCTTGGGATATACATGGAGGATAATAAAACCGAATTCTCAGTTTTGGTGGACAGAGCTATTGGAGGATCCAGCTTACAAGATGGACAAATAGAGTTGATGCTCCACAGGAGATTACTACTTGATGATTCAAGAGGTGTTGCAGAGGCTCTAAATGAAACAGATTGTGTTGGTGGTGATTGCAGGGGTCTAACTGTCCAAGGGAAATATTACTACAGAATAAACCCCTCAGGCGAGGGTGCTAAGTGGCGTCGTACTTTTGGCCAGGAAATATATTCTCCACTTCTCTTAGCCTTTGCTGAAAAGGATGAGAAAGATGACTGGATGAATTCCCATGTATTAACATTTTCAGGAATAGATTCTTCTTACGCATTGCCTGATAATATCGCTATTATAACTTTGCAGGAACTTGAAGATGGGAAGATTCTTCTTCGGTTAGCACATCTATATGAGATTGAAGAAGACAAGGATCTCTCTGTAATGGCAACTGTGGAGCTGAAAAAGCTTTTCCCTGGGAGGAAGATCAAAGAGGTAAAGGAGATGAGCTTATCTGCCAATCAAGAAAGAACAGAGATGGAGAAAAAAAGACTTAATTGGAAAGTAGAAGGTTCTTCTGGAAATAGACATGTTTCAAGGGGAGGACCAGTTGATCCAAAAGAGCTGAAGGTGGAGCTTTCCCCAATGGAAATCCGCACTTTTATCATTTCTTTTGATGGTGTGTCAGACCAACTTTTTTATTCAATGTAG 3090 0.4052 MGEATIPHFQQLMAKKLLFLLTLLEILLCGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSMVHALLADKNRKFIYVEMAFFKRWWRDQSEAVQDVVKKLVSSGQLEFINGAMSMHDEAVTHYIDMIDQTALGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSSQIFAGAFPENYEPPSGFYFEVNDNSPIVQDNMELFDYNVQERVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYATNEYWPIKTDDFFPYADRANGYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLAIGYREAEELVSSSLACLVESPLLSRCQNPVPKFQQCPLLNISYCPASEVDLVQGKNLVILVYNSLGWWRNEVIRFPVTEANVIVQNSDGKEIESQLLPQAEKYLDLRNYYVKAYVGRAPPKSPKYWLAFTVSVPPLGFSTYTVSTAKKTGSTRSSVATYKSSEKSKFEVGKGNLKLKFSTDQEKCTNYVNTRDKVAEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTYQINHEKKVPLTVLNGPVLDEVHQQINPWIYQITRLYKGKEHVEVEFIVGPIPIEDGTGKEIATQISTTMETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNQPAAGNYYPINLGIYMEDNKTEFSVLVDRAIGGSSLQDGQIELMLHRRLLLDDSRGVAEALNETDCVGGDCRGLTVQGKYYYRINPSGEGAKWRRTFGQEIYSPLLLAFAEKDEKDDWMNSHVLTFSGIDSSYALPDNIAIITLQELEDGKILLRLAHLYEIEEDKDLSVMATVELKKLFPGRKIKEVKEMSLSANQERTEMEKKRLNWKVEGSSGNRHVSRGGPVDPKELKVELSPMEIRTFIISFDGVSDQLFYSM* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0875 1029 Pfam Glycosyl hydrolases family 38 C-terminal domain 612 826 IPR011682 GO:0004559|GO:0006013
Pvu1g0875 1029 Gene3D - 895 1021 - -
Pvu1g0875 1029 Gene3D Glycoside hydrolase family 38, central domain 408 461 IPR037094 GO:0004559|GO:0006013
Pvu1g0875 1029 Gene3D Glycoside hydrolase family 38, central domain 329 407 IPR037094 GO:0004559|GO:0006013
Pvu1g0875 1029 SUPERFAMILY Families 57/38 glycoside transferase middle domain 364 458 IPR028995 -
Pvu1g0875 1029 SUPERFAMILY Galactose mutarotase-like 463 1018 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu1g0875 1029 Gene3D - 608 874 - -
Pvu1g0875 1029 SUPERFAMILY Glycoside hydrolase/deacetylase 37 361 IPR011330 GO:0005975
Pvu1g0875 1029 SMART Alpha_mann_mid_2 365 439 IPR015341 GO:0004559|GO:0006013
Pvu1g0875 1029 Gene3D Glycoside hydrolase 38, N terminal domain 48 328 IPR027291 -
Pvu1g0875 1029 Coils Coil 956 976 - -
Pvu1g0875 1029 Gene3D - 485 607 IPR013780 -
Pvu1g0875 1029 PANTHER ALPHA-MANNOSIDASE 26 1020 - -
Pvu1g0875 1029 Pfam Alpha mannosidase middle domain 366 457 IPR015341 GO:0004559|GO:0006013
Pvu1g0875 1029 Pfam Glycosyl hydrolases family 38 N-terminal domain 49 360 IPR000602 GO:0004559|GO:0006013
Pvu1g0875 1029 PANTHER ALPHA-MANNOSIDASE 26 1020 - -
Pvu1g0875 1029 CDD GH38N_AMII_LAM_like 48 324 - -
Pvu1g0875 1029 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 909 1015 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0875 Pvu-Chr1 15147569 15163821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0875 13 932 Glycoside Hydrolase AT5G13980 71.413 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0875 K01191 - gmx:100776282 1872.06