Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0871 ATGGTCAATGCGGCAGTGGTATTCGCTGTTTTGGTGGCGGCGATTTGGGTTGCGGAATCAGAGTACATAGAGTACAATACGACGCAGAGGATAGTACCAGACAAAATAAACGTGCACTTGGTACCTCACTCCCACGACGATGTTGGCTGGCTCAAGACCGTCGATCAGTACTACGTTGGAGCCAATAACTCCATTCGGGGTGCATGTGTGCAGAACGTGCTGGATTCTGTGATATCCTCGCTCTTGGAGGACAAGAATCGCAAGTTCATATATGTTGAGATGGCTTTTTTCCAAAGATGGTGGAGACAGCAAAGTAAAGCAATGAAAATTAAGGTCAAGGAGCTTGTCAACTCGGGTCAGTTGGAATTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACTCCACATTACATTGATCTAATTGACCAGACCACACTGGGGCATCAATTTATCAAAGAGGAATTTGGTAAGGTTCCAAGAGTTGGTTGGCAGATTGACCCATTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGTGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATCGAGCCAAGCGATTGAAGGAGAAGACTCTTGAGGTTATTTGGCAGGGTTGCAAGTCTCTTGGCTCTTCTTCACAGATATTTACTGGGATATTTCCCAGGCATTATGACCCCCCTGATGGTTTTACATTTGAGATAAATGATGTTTCACCTCCTATTCAGGACGACATTCTACTATTTGACTATAATGTTCAAGAAAGGGTCAACGATTTTGTATATGCCGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATGATGTGGACAATGGGTACAGATTTCCGTTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTCATTCACTATGTTAATCAGGATGGACGTGTCAATGCATTATATTCAACGCCATCTATCTACACTGATGCAAAATATGCAGCTAATGAATATTGGCCTCTTAAAGTTGGTGATTTCTTCCCGTATGCAGATCACCCAAATGCATATTGGACTGGATATTTTACAAGTAGGCCAGGTTTGAAGGGCTATGTGAGAGTGATGAGTTCTTACTATCAGGCTGCAAGGCAATTGGAATATTTTAAAGGGAGGAATGAAACAGGACCAAACACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTTAGTGGCACAGAAAGACAACATGTTGCATCTGATTATGCGTTGCGTCTCTCATTGGGATATGAAGAGGCAGAAAGATTGGTTGCATCTGCACTTGCTTCCTTGGTAAATCAAAGATTAAGTTCCCATAGGATGAACCCAGTGAAAGATTTCCAACAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCATCAGAAACTACGTTGGTTAATGGAAAGATCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTAAGTTCTTTTGCTGGTAGTTAG 1536 0.4212 MVNAAVVFAVLVAAIWVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISSLLEDKNRKFIYVEMAFFQRWWRQQSKAMKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVIWQGCKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVYAALAQANVTKTNHMMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEYWPLKVGDFFPYADHPNAYWTGYFTSRPGLKGYVRVMSSYYQAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSLGYEEAERLVASALASLVNQRLSSHRMNPVKDFQQCPLLNISYCPPSETTLVNGKILVIVVYNPLAWKREDVIRIPVSSFAGS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0871 511 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
Pvu1g0871 511 SUPERFAMILY Families 57/38 glycoside transferase middle domain 352 447 IPR028995 -
Pvu1g0871 511 Gene3D Glycoside hydrolase family 38, central domain 396 451 IPR037094 GO:0004559|GO:0006013
Pvu1g0871 511 SUPERFAMILY Glycoside hydrolase/deacetylase 25 351 IPR011330 GO:0005975
Pvu1g0871 511 Gene3D Glycoside hydrolase family 38, central domain 317 395 IPR037094 GO:0004559|GO:0006013
Pvu1g0871 511 PANTHER ALPHA-MANNOSIDASE 14 506 - -
Pvu1g0871 511 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
Pvu1g0871 511 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Pvu1g0871 511 SUPERFAMILY Galactose mutarotase-like 452 507 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu1g0871 511 CDD GH38N_AMII_LAM_like 36 312 - -
Pvu1g0871 511 Gene3D - 463 510 IPR013780 -
Pvu1g0871 511 Pfam Alpha mannosidase middle domain 353 445 IPR015341 GO:0004559|GO:0006013
Pvu1g0871 511 PANTHER ALPHA-MANNOSIDASE 14 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0871 Pvu-Chr1 15076793 15087186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0871 10 507 Glycoside Hydrolase AT3G26720 81.400 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0871 K01191 - gmx:100795651 980.319