Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1042 ATGATAATGGCCAACACGGTGATGCTCATATTCACCGTTTTGGTATCTGCAATTTTTGTAGCAAAATCAGAGTACATAGATTACAACACAACACACAGAATCATCCCCAACAAAATAAACGTTCACTTGGTTCCTCATTCCCATGATGATGTTGGTTGGCTTAAAACCGTTGATCAGTACTACGTTGGATCCAACAACTCCATTCGGGGTGCATGTGTGCAGAACGTGCTTGATTCTGTGATATCTTCACTCTTGGAGGATCAAAATCGAAAATTTATCTATGTTGAAATGGCATTTTTCCAGAGATGGTGGAGGCAGCAAAGTAAAGCTAAGAAACTTAAAGTCAAAGAACTTGTCAACTCGGGTCAGCTCGAATTCATAAATGGTGGTATGTGCATGCATGATGAGGCTACCCCGCATTACATTGACCTGATTGATCAGACCACTCTCGGGCATCAATTCATCAAAGACGAGTTTGGTAAGATTCCAAGAGTTGGTTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGAGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAAAACTCTAGAGGTTGTTTGGCAAGGTTCCAGGTCTCTTGGCTCTTCTTCACAAATTTTTACTGGGATATTTCCCAGGCATTATGATCCTCCAGATGGTTTCACTTTCGAGATAAATGATGTTTCCCAACCTATTCAGGACGACATTCTACTGTTTGATTATAATGTTGAAGAAAGAGTCAACGACTTTGTATCTGCTGCCTTGGCTCAGGCTAATGTAACTAGGACGAATCACATAATGTGGGAAATGGGAACAGACTTCCGTTATCAATACGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGTCGAGTCAATGCATTGTATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTAATGAGCAGTGGCCACTTAAAACTGATGATTTCTTCCCGTATGCTGATCATCCAAATGCATATTGGACCGGTTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGAGTGATGAGTGGTTACTATCAGGCAGCAAGGCAATTGGAATCTTTTAAAGGGAGGAATGAGTCAGGACCAAATACTGATGCGTTAGCTGATGCTTTAGCGCTTGCTCAGCACCATGATGCTGTTAGTGGCACAGAAAGACAACATGTTGCTGCTGATTATGCAAAGCGGATCTCAATAGGCTATGCTGAGGCAGAAGGCTTGGTATCATCTGCACTTGCTTTATTGGTAAATCAAAGATCAAGTTCACATGTGATAAACTCGGCGACAGGCTTCCAGCAGTGCCCTCTTCTTAATATAAGCTATTGTCCTCCTTCAGAAGCTACCTTGGCTAACGGAAAAAGCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAGGAAGTAATTCGAATTCCTGTTTCAACCAGAGAGGTTTCTGTCAAGGATTCTTCTGGGAAGGAAATTGAATCTCAGCTTCTGCCTCTATCTAATATTACTTTAAGCGTAAGAAAAAAATATGTCAAAGCATATATAGGAACAGCCCCTCCTGGGGAACTCAAATATTTGCTTGCATTTTCGGTATCTGTACCTCCCATTGGTTTCAGCACGTATATAGTATCAAAGCCTAAACAGACAGGTCATATTTCAACTATCTCAAAGGAGTTCAGATCAGAAGGAAGTACTAATAATAGCATAGAAGTCGGACAAGGGAATTTAAAGCTACTTTATTCTGCAGATGAAGGAAAGTTGACTCGTTATGTTAACAGCAGAAATCAAGTTACATCATCAGTTGAACAATCATACGGTTTCTATTCTGGATACATTGGGGATGCTAAAGATTCTCAGGCTTCCGGGGCATACGTCTTCCGTCCAAATGGCTCGTTTCCCATTAAATCTGATCAGCAGGCATCATTAACTGTCCTGCGTGGTCCGATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCTCAGATTACGAGGATATATAAGGAAAAGGAGCATGTTGAAGTTGAGTTCACAATTGGGCCTATACCTGTGGATGATGGCATTGGGAAAGAAGTTATTACTCAATTTTCAACTACAGTGAAGACCAACAAGACATTCTACACAGATTCTAATGGACGTGACTTTATTAAAAGGATTCGAGATTTCAGGACTGACTGGGATCTAGAAGTGCACCAACCCATCGCTGGAAACTATTATCCAGTTAATTTAGGAATATATATGCAAGATAGCAGTACGGAACTCTCGGTCTTGGTGGACCGCTCAGTTGGGGGTTCCAGTTTGGTCGATGGTCAAATAGAGCTGATGCTCCACAGGAGGTTGCTACATGATGATGCAAGAGGTGTTGGAGAGACACTTAATGAAACCGTTTGCATTGCTGATAAATGTGAAGGCTTGACCATTCAAGGAAAACTGTACCTTAGAATTGACCGTAAAGGTGAAGGTGCTAAATGGCGTCGTACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACTGAGCAGGATGCGGATAATCGGTTGCATTTCCAACAACCAACATTTTCTGGCATAGATTCTTCCTACAGTTTACCAAACAACACGGCGCTTCTAACTCTCCAGGAATTTGGAAATGGAAAAGTACTCTTAAGACTGGCTCACCTTTATGAGGTTGGAGAGGACAAAGATTATTCGGTAACCGCAAATGTAGAGTTGAAAAAGCTTTTCCCTAACAAGAAGATAAGTAAAGTGACAGAGATGAGTTTATCTGCTAATCAAGAAAAAGCTGATATGGAAAAGAAGAAATTAGTTTGGAAAGTTGAAGGAGGCTCCAATGAACAATCTAAGGTGGTGAGGGGAGGACCTGTTGATCCTACAAAGCTTGTTGTTGAACTTGTTCCGATGGAGATTCGGACATTCTTTGTCGACTTTAATCCCCTCCAAACAGTTCATACAGCAGAAAGTCATGTAGCAATGTAA 3078 0.4126 MIMANTVMLIFTVLVSAIFVAKSEYIDYNTTHRIIPNKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNVLDSVISSLLEDQNRKFIYVEMAFFQRWWRQQSKAKKLKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVVWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSQPIQDDILLFDYNVEERVNDFVSAALAQANVTRTNHIMWEMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEQWPLKTDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSGYYQAARQLESFKGRNESGPNTDALADALALAQHHDAVSGTERQHVAADYAKRISIGYAEAEGLVSSALALLVNQRSSSHVINSATGFQQCPLLNISYCPPSEATLANGKSLVIVVYNPLAWKREEVIRIPVSTREVSVKDSSGKEIESQLLPLSNITLSVRKKYVKAYIGTAPPGELKYLLAFSVSVPPIGFSTYIVSKPKQTGHISTISKEFRSEGSTNNSIEVGQGNLKLLYSADEGKLTRYVNSRNQVTSSVEQSYGFYSGYIGDAKDSQASGAYVFRPNGSFPIKSDQQASLTVLRGPILDEVHQQLNPWVSQITRIYKEKEHVEVEFTIGPIPVDDGIGKEVITQFSTTVKTNKTFYTDSNGRDFIKRIRDFRTDWDLEVHQPIAGNYYPVNLGIYMQDSSTELSVLVDRSVGGSSLVDGQIELMLHRRLLHDDARGVGETLNETVCIADKCEGLTIQGKLYLRIDRKGEGAKWRRTVGQELYSPLLLAFTEQDADNRLHFQQPTFSGIDSSYSLPNNTALLTLQEFGNGKVLLRLAHLYEVGEDKDYSVTANVELKKLFPNKKISKVTEMSLSANQEKADMEKKKLVWKVEGGSNEQSKVVRGGPVDPTKLVVELVPMEIRTFFVDFNPLQTVHTAESHVAM* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1042 1025 Pfam Alpha mannosidase middle domain 356 448 IPR015341 GO:0004559|GO:0006013
Tpr6g1042 1025 SUPERFAMILY Galactose mutarotase-like 458 1010 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr6g1042 1025 Gene3D - 476 599 IPR013780 -
Tpr6g1042 1025 CDD GH38N_AMII_LAM_like 39 315 - -
Tpr6g1042 1025 PANTHER ALPHA-MANNOSIDASE 12 1014 - -
Tpr6g1042 1025 Gene3D - 885 1012 - -
Tpr6g1042 1025 Gene3D - 600 866 - -
Tpr6g1042 1025 SUPERFAMILY Glycoside hydrolase/deacetylase 28 354 IPR011330 GO:0005975
Tpr6g1042 1025 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 901 1007 IPR041147 -
Tpr6g1042 1025 Gene3D Glycoside hydrolase family 38, central domain 320 398 IPR037094 GO:0004559|GO:0006013
Tpr6g1042 1025 SMART Alpha_mann_mid_2 356 430 IPR015341 GO:0004559|GO:0006013
Tpr6g1042 1025 Pfam Glycosyl hydrolases family 38 N-terminal domain 40 351 IPR000602 GO:0004559|GO:0006013
Tpr6g1042 1025 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 818 IPR011682 GO:0004559|GO:0006013
Tpr6g1042 1025 Gene3D Glycoside hydrolase 38, N terminal domain 39 319 IPR027291 -
Tpr6g1042 1025 Gene3D Glycoside hydrolase family 38, central domain 399 454 IPR037094 GO:0004559|GO:0006013
Tpr6g1042 1025 SUPERFAMILY Families 57/38 glycoside transferase middle domain 356 458 IPR028995 -
Tpr6g1042 1025 PANTHER ALPHA-MANNOSIDASE 12 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1042 Tpr-Chr6 9738732 9749289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1042 3 949 Glycoside Hydrolase AT3G26720 73.418 0.0 1481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1042 K01191 - gmx:100795651 1764.97