Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2060 ATGGCGAATGATTTACTTTTTTGGTTGGTCCTTTTTGGAGCAATCTGTTGTGGGCAATCCAAGTTCATGGTGTATAACACCTCGCACAGCATAGTTCCCGGAAAGCTCAACGTTCATCTGGTTCCCCACACCCACGATGACGTTGGTTGGTTGAAGACTGTTGATCAGTACTATGTTGGCTCTAATAATTCGATTCAGGGGGCTTGTGTTCAAAATGTGTTGGACTCCATAGTTCCTGCGCTGTTGGCTGACAAGAATCGAAAATTTATCTACGTTGAGCAAGCTTTTTTCCAGCGATGGTGGAAGGATCAGAGTGAAGCTGTTAAGCATGTTGTTAAGCAACTTGTCAGTTGGGGTCAGCTAGAGTTCATAAATGGGGGTATGTGCATGCATGATGAGGCAGCAACCCATTACATAGACCTGATTGATCAGACAACAATGGGGCATCGGTTCCTGAAAGAGGAGTTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTACTGTGCAGGCATACTTATTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGAATAGATTATCAAGATAGGGCTAAACGCAAAAGTGAGAAGAGTCTTGAGGTTATCTGGCGGGGAAGTAAGAGCCTTGGCTCATCCGCCCAGATATTTGCTGGTGCATTCCCTGAGAACTATGAGCCACCTGCTGGATTTTACTTCGAAGTTAATGATGGCTCACCAATAGTTCAAGATAACATTGATTTGTTTGATTACAATGTCCAAGATCGAGTAAATGACTTTGTTGCTGCTGCAGTATCACAGGCAAACATAACTCGAACAAATCATATAATGTGGACCATGGGAACTGATTTTAAGTATCAATATGCACACACATGGTTCCGGCAGATGGACAAGCTTATTCACTATGTTAACAAGGATGGACGTGTCAATGCCCTATACTCTACACCATCTATATATACTGATGCGAAATATGCTACAAATGAGTTGTGGCCAATCAAGACTGATGATTTCTTTCCCTATGCAGATCGAGCAAATGCTTACTGGACAGGATACTTTACCAGTAGGCCGGCCTTGAAATACTATGTCAGACTATTGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGGGGGAGGATGAATTTTGGGCCTAATACTGACTCACTGGCTGATGCTTTAGCAATTGCTCAACACCATGATGCAGTCACTGGTACAGAAAAGCAGCATGTGGCCAATGATTATTCTAAACGATTGTCAATAGGTTACAAGGAGGCAGAGCAATTGGTTGCATCTTCACTTGCTTGCCTGGTGGAGTCCATATCACTTCAGGGATGTCGGAACCCAGTTACAGAGTTTCAACAGTGTCCACTCATGAATATAAGTTACTGTCCTCCATCAGAAGCTGATCTGATTCAAGGAAAAAAATTGGTTATTGTGGTTTACAACTCTCTTGGTTGGCAGAGGAATGAAGTGGTTCGAATTCCTGTTAACAATGAAGATGTTACTGTTCATGATTCTGAGGGTAAAGAAATAGTATCACAACTTCTTCCTCAGGCCGAAGTCTATGCAGACTTAAGAAACTACTATGTCAAGGCATATTTGGGGAAAACTTCACCCAGGACACCCAAGTATTGGCTTGCATTTTCAGTATCTGTACCACCTCTTGGTTTCAGCACATATACAGTCTCAGCTGCCAAAAGGACAGGTTCCACCAGATCATCTGTATATACATATCAACATAATGAAAATTCTAAATTTGAAGTTGGTCAAGGGAATTTGAAGCTTATGTTTTCTCCAAATCAAGAAAAATTTACCAACTATGTTAATATCAGGAACTTGGTTGAGGAACAGATTGAACAGAGGTACATTTACTACTCAGGATATAATGGAACTGATGATAAAGAGCCACAGAATTCTGGTGCCTATATCTTCCGTCCAAATGGCACATATCTCATAAAGCATGAAAGACAGGTTCCATTGACTGTTATGCGTGGACCCTTACTAGATGAAGTACATCAACAAATCAACTCATGGATATATCAGATTACCAGACTGCACAAGGAAAAGGAGCATGTTGAAGTAGAGTTTATTGTTGGCCCCATACCTATTGAAGATGGAATTGGTAAAGAAGTTGTCACTAAGATATCAACCTCCATGAAAACCAACAAAACCTTTTATACTGATTCTAATGGGCGTGATTTCATCAAAAGGGTACGCAACTATAGAGCAGACTGGGACCTCAAAGTGAACCAACCTGTTGCTGGGAACTATTATCCTATTAATCTTGGGATATATATAAAAGACAATAAGACAGAATTTTCAGTTTTAGTGGATCGATCTGTAGGAGGATCCAGCTTAGCAGATGGACAGATAGAGCTGATGGTTCACAGGAGATTGCTTCTTGATGATTCAAGAGGTGTTGCAGAGGCTTTAAATGAAACAGACTGTGTTCTTGATGATTGCAGGGGCCGAACAGTCCAAGGAAAAGTATACTTCAAAATAGATCCCCTGGGTGAGGGTGCTAAGTGGCGTCGTACAGTTGGCCAGGAAATATACTCTCCACTTCTGTTGGCCTTTTCTGAACAGGATGAAGATGACTGGATAAATTCCCATGTATTTACATATTCAGGAATTGACTCTAATTACAGTTTACCTGACAACATTGCAATCATAACCCTACAGGAGCTAGACAATGGAAAAGCTCTCCTTCGTTTAGCACATCTATATGAGATTGAAGAAGATAAGGATCTCTCCGTAATGGCAAGTGTGGAGCTGAAAGAGCTGTTCCCTAGGAAGAAGATCAAAGAGGTGAAAGAGATGAATTTATCTGCAAATCAAGAAAGGACAGAGATGGAGAAAAAAAGACTCAATTGGAAAGTAGAACGCTTTTCCGGGAACGAATATATTTTAAGGGGAGGGCCTCTTGATCCGAAAGAGCTATCTGTGGAGCTTGCCCCGATGGAAATCCGCACATTTCTCATTTCCTTTGATTATGCATCTGACCAAAAAGTATTTGACGCCTAG 3051 0.413 MANDLLFWLVLFGAICCGQSKFMVYNTSHSIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWKDQSEAVKHVVKQLVSWGQLEFINGGMCMHDEAATHYIDLIDQTTMGHRFLKEEFGVTPRIGWQIDPFGHSTVQAYLLGAEVGFDSLFFGRIDYQDRAKRKSEKSLEVIWRGSKSLGSSAQIFAGAFPENYEPPAGFYFEVNDGSPIVQDNIDLFDYNVQDRVNDFVAAAVSQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKYATNELWPIKTDDFFPYADRANAYWTGYFTSRPALKYYVRLLSGYYLAARQLEFFRGRMNFGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEQLVASSLACLVESISLQGCRNPVTEFQQCPLMNISYCPPSEADLIQGKKLVIVVYNSLGWQRNEVVRIPVNNEDVTVHDSEGKEIVSQLLPQAEVYADLRNYYVKAYLGKTSPRTPKYWLAFSVSVPPLGFSTYTVSAAKRTGSTRSSVYTYQHNENSKFEVGQGNLKLMFSPNQEKFTNYVNIRNLVEEQIEQRYIYYSGYNGTDDKEPQNSGAYIFRPNGTYLIKHERQVPLTVMRGPLLDEVHQQINSWIYQITRLHKEKEHVEVEFIVGPIPIEDGIGKEVVTKISTSMKTNKTFYTDSNGRDFIKRVRNYRADWDLKVNQPVAGNYYPINLGIYIKDNKTEFSVLVDRSVGGSSLADGQIELMVHRRLLLDDSRGVAEALNETDCVLDDCRGRTVQGKVYFKIDPLGEGAKWRRTVGQEIYSPLLLAFSEQDEDDWINSHVFTYSGIDSNYSLPDNIAIITLQELDNGKALLRLAHLYEIEEDKDLSVMASVELKELFPRKKIKEVKEMNLSANQERTEMEKKRLNWKVERFSGNEYILRGGPLDPKELSVELAPMEIRTFLISFDYASDQKVFDA 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2060 1016 FunFam Alpha-mannosidase 473 597 - -
Dere01g2060 1016 Gene3D Glycoside hydrolase family 38, central domain 395 450 IPR037094 GO:0004559|GO:0006013
Dere01g2060 1016 FunFam Alpha-mannosidase 36 316 - -
Dere01g2060 1016 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 896 1002 IPR041147 -
Dere01g2060 1016 SUPERFAMILY Galactose mutarotase-like 456 1005 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dere01g2060 1016 FunFam Alpha-mannosidase 315 394 - -
Dere01g2060 1016 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 450 IPR028995 -
Dere01g2060 1016 SUPERFAMILY Glycoside hydrolase/deacetylase 25 349 IPR011330 GO:0005975
Dere01g2060 1016 Gene3D Glycoside hydrolase family 38, central domain 317 394 IPR037094 GO:0004559|GO:0006013
Dere01g2060 1016 FunFam Alpha-mannosidase 395 450 - -
Dere01g2060 1016 Coils Coil 943 963 - -
Dere01g2060 1016 PANTHER ALPHA-MANNOSIDASE 8 1006 - -
Dere01g2060 1016 Gene3D - 463 570 IPR013780 -
Dere01g2060 1016 Pfam Glycosyl hydrolases family 38 C-terminal domain 600 814 IPR011682 GO:0004559|GO:0006013
Dere01g2060 1016 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Dere01g2060 1016 CDD GH38N_AMII_LAM_like 36 312 - -
Dere01g2060 1016 Gene3D - 571 862 - -
Dere01g2060 1016 FunFam Alpha-mannosidase 596 862 - -
Dere01g2060 1016 Pfam Alpha mannosidase middle domain 353 445 IPR015341 GO:0004559|GO:0006013
Dere01g2060 1016 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
Dere01g2060 1016 Gene3D - 882 1011 - -
Dere01g2060 1016 FunFam Alpha-mannosidase 882 1007 - -
Dere01g2060 1016 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2060 Dere-ChrDere01 34590069 34609712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2060 5 919 Glycoside Hydrolase AT5G13980 71.553 0.0 1392