LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1846	ATGGCGAAGAAATTGCTCCTTTTGTTGACCCTTTTGGAAATTCTCCTTTGGGGACAATCCAAGTTTATGGTGTACAACACCTCTCAGGGCATAGTCCCTGGGAAGCTCAATGTTCATCTGGTAGCTCACACCCACGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCCAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGCGTTGGACTCCATGGTGCATGCTCTCTTGGCTGACAAGAACAGAAAATTTATCTATGTTGAGATAGCCTTTTTCAAGCGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGATGTAGTTAAGAAACTCGTTAGTTCGGGTCAACTAGAGTTCATAAATGGCGCCATGTGTATGCATGATGAGGCAGTAACTCATTATATAGACATGATTGATCAGACTGCACTTGGacataaatttctaaaagaggAGTTTGGTGTCACTCCTAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTGCAGGCTTACTTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTAGGATAGATTACCAAGATAGGGCTAAGCGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCCTCCGCCCAGATCTTTGCTGGAGCATTCCCTGAAAATTATGAGCCACCTTCAGGATTTTACTTTGAAGTTAATGATAACTCACCAATAGTTCAAGATAACATGGAATTGTTTGATTACAATGTCCAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATCACAGGCGAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGACAGCTGGATAAGCTTATTCATTATGTAAACAAGGATGGACGTGTCAATGCTCTGTACTCTACACCATCCATATATACTGATGCAAAATATGCTACAAATGAGTCCTGGCCAATCAAGACTTATGATTTCTTCCCTTATGCAGATAGTGCAAATGCTTACTGGACAGGATACTTTACCAGTAGGCCAGCTATCAAACGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGGGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCCAATGATTATTCTAAACGATTGTCAATAGGCTACAAGGAGGCAGAGGAATTGGTTTCATCATCACTGGCTTGCTTGGCTGAGTCACCGTTGCTTACTAGATGTCAAAACCCAGTTACAAAGTTTCAACAATGTCCACTTTTGAACATAAGTTACTGTCCTACCTCAGAAGTTGATCTGGTTCAAGGAAagaatttgGTTATTGTGGTTTACAACTCTCTTGGTTGGAGGAGGAATGAAGTGATTCGGATTCCTGTTATTGATGCCGATGTTACAGTTCATGACTCTAATGGTATAGAAATAGAATCTCAAGTTCTTCCTCAGGCTGAGGTATATGTAGACTTAAGAAACTACTATGTGAAGGCATATTTGGGACAAACTCCACCCGAGACATCCAAGTATTGGCTTGCATTTACAGTTTCTGTACCACCACTTGGTTTTAGCACCTACACTGTCTCAACTGCCAAAAGGACAGGGTCCACTAGATCATCAGTAGATACATATAAAAGTAGCGAAAAGTCTAAATTTGAAGTTGGTCAAGGAAATTTGAAGCTTACATTTTCTACGGATCAAGAAAAGTGTACCAATTATGTTAATATAAGAAACCTGGTTGAGGAACAGGTTGAACTGAGTTACCTTTACTATTCTGGATACAACGGAACTCATCAAAAAGATCCACAGAATTCTGGGGCCTATATCTTCCGTCCAAATGGCACATATCCCATAAACCATGAAAAACAGGTTCCACTGACTGTTTTGCAAGGACCGGTACTAGATGAAGTGCATCAACGAATCAATCCATGGATATATCAGATTACCAGACTGTACAAAGGAAAGGAGCATATTGAAGTAGAGTTTATTGTTGGCCCTATACCAATTGAAGATGGAATTGGTAAAGAAGTTGCCACTCAGATTTCAACTACTATGgaaaccaacaaaacattttacacAGATTCTAATGGGCGTGATTTTATCAAAAGGATACGTGACTACAGAACAGACTGGGACCTGGAAGTGAGCCAACCCGCTGCTGGAAATTATTACCCCATAAATCTTGGGATATACATAAAGGATGATAAAACAGAATTCTCAGTTTTGGTGGATAGATCTATTGGAGGATCCAGCTTAGAAGATGGACAAATAGAGCTGATGGTCCACAGGAGATTACTACTTGATGATTCAAAAGGTGTTGCAGAGGCTCTAAATGAAACAGATTGTGTTGGTGATGATTGCAGGGGTCTAACTGTCCAAGGTAAATATTACTACAGAATAGATCCCTTAGGCGAGGGTGCTAAGTGGCGTCGTACTTTTGGCCAGGAAATATATTCTCCACTTCTGTTGGCCTTTGCTGAAAAGGATGATAAAGATGACTGGATGAATTCCCGTGTATTAACATTTTCAGGAACTGATTCTTCTTACACATTACCTGATAATATTGCTATTATAACATTACAGGAACTTGATGATGGGACAGTTCTCCTTCGATTAGCACATCTATATGAGATTGAAGAAGACAAGGATCTTTCTGTAATGTCAAGTGTGGAGCTGAAAAAGCTCTTCCCTGGGAGGAAGATCAAAGAGGTGAAGGAGATGAATGTATCTGCCAATCAAGAAAGGACAGAGATGGAGAAAAAAAGACTTGCTTGGAAAGTAGAAGGCTCTTCTGGAAATAGACATGTGTCAAGGGGAGGGCCAGTTGATCCAAAAGAGCTAAACGTGGAGCTTGCTCCAATGGAAATCCGCACTTTTATCATTTACTTTGATGATGTGTCTAACCAACTTTTTGATGCATTGTAG	3054	0.4018	MAKKLLLLLTLLEILLWGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNALDSMVHALLADKNRKFIYVEIAFFKRWWRDQSEAVQDVVKKLVSSGQLEFINGAMCMHDEAVTHYIDMIDQTALGHKFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPSGFYFEVNDNSPIVQDNMELFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYATNESWPIKTYDFFPYADSANAYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLACLAESPLLTRCQNPVTKFQQCPLLNISYCPTSEVDLVQGKNLVIVVYNSLGWRRNEVIRIPVIDADVTVHDSNGIEIESQVLPQAEVYVDLRNYYVKAYLGQTPPETSKYWLAFTVSVPPLGFSTYTVSTAKRTGSTRSSVDTYKSSEKSKFEVGQGNLKLTFSTDQEKCTNYVNIRNLVEEQVELSYLYYSGYNGTHQKDPQNSGAYIFRPNGTYPINHEKQVPLTVLQGPVLDEVHQRINPWIYQITRLYKGKEHIEVEFIVGPIPIEDGIGKEVATQISTTMETNKTFYTDSNGRDFIKRIRDYRTDWDLEVSQPAAGNYYPINLGIYIKDDKTEFSVLVDRSIGGSSLEDGQIELMVHRRLLLDDSKGVAEALNETDCVGDDCRGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFAEKDDKDDWMNSRVLTFSGTDSSYTLPDNIAIITLQELDDGTVLLRLAHLYEIEEDKDLSVMSSVELKKLFPGRKIKEVKEMNVSANQERTEMEKKRLAWKVEGSSGNRHVSRGGPVDPKELNVELAPMEIRTFIIYFDDVSNQLFDAL	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1846	1017	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	897	1003	IPR041147	-
	Ssu4g1846	1017	SUPERFAMILY	Galactose mutarotase-like	451	1006	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Ssu4g1846	1017	Gene3D	-	884	1009	-	-
	Ssu4g1846	1017	SMART	Alpha_mann_mid_2	353	427	IPR015341	GO:0004559\|GO:0006013
	Ssu4g1846	1017	Pfam	Glycosyl hydrolases family 38 C-terminal domain	599	813	IPR011682	GO:0004559\|GO:0006013
	Ssu4g1846	1017	PANTHER	ALPHA-MANNOSIDASE	14	1008	-	-
	Ssu4g1846	1017	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	352	446	IPR028995	-
	Ssu4g1846	1017	Pfam	Alpha mannosidase middle domain	353	445	IPR015341	GO:0004559\|GO:0006013
	Ssu4g1846	1017	Gene3D	Glycoside hydrolase 38, N terminal domain	36	316	IPR027291	-
	Ssu4g1846	1017	Coils	Coil	944	964	-	-
	Ssu4g1846	1017	Gene3D	Glycoside hydrolase family 38, central domain	317	395	IPR037094	GO:0004559\|GO:0006013
	Ssu4g1846	1017	Gene3D	-	473	596	IPR013780	-
	Ssu4g1846	1017	Gene3D	-	597	862	-	-
	Ssu4g1846	1017	Gene3D	Glycoside hydrolase family 38, central domain	396	449	IPR037094	GO:0004559\|GO:0006013
	Ssu4g1846	1017	Pfam	Glycosyl hydrolases family 38 N-terminal domain	37	348	IPR000602	GO:0004559\|GO:0006013
	Ssu4g1846	1017	CDD	GH38N_AMII_LAM_like	36	312	-	-
	Ssu4g1846	1017	SUPERFAMILY	Glycoside hydrolase/deacetylase	25	349	IPR011330	GO:0005975
	Ssu4g1846	1017	PANTHER	ALPHA-MANNOSIDASE	14	1008	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1846	Ssu-Chr4	33769521	33784612	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g1846	1	920	Glycoside Hydrolase	AT5G13980	71.629	0.0	1400

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1846	K01191		-	gmx:100776282	1904.41

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g1846	4	33769521	33784612	Ssu4g1846	4	33769521	33784612	ECH