Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1682 ATGGCAAACGCGGCGGTGCTATTCGCCGTTTTCCTGGCGGCGATTTGGGTTGCGGAATCAGAGTACATAGAGTACAACACCACGCAGAGGATTGTCCCCGACAAGATAAACGTGCACTTAGTACCTCACTCTCACGATGATGTCGGGTGGCTCAAGACCGTCGATCAGTACTACGTTGGAGGCAACAACTCCATTCGGGGTGCATGTGTGCAGAACGTGCTGGATTCTGTGATTTCCTCGCTCTTGGAGGACACGAATCGCAAGTTTATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGGCAGCAAAGTAAAGCTAGGAAAATTAAAGTCAAGGAGCTTGTCAATTCTGGTCAGCTAGAATTCATAAATGGAGGTATGTGTATGCATGATGAGGCCACTCCGCATTATATTGACCTAATTGATCAGACCACTCTTGGGCATCAATTCATTAAAGAGGAGTTTGGTAAGACTCCAAGAGTTGGCTGGCAGATTGATCCGTTCGGCCATTCTGCAGTTCAAGCTTACTTGCTTGGTGCTGAGCTAGGATTCGACTCACTCTTCTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGGTTAAAGGAGAAGACTCTAGAGGTTGTTTGGCAGGGTTCCAGGTCTCTTGGTTCTTCTTCACAAATATTCACCGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACATTTGAGATAAATGATGTTTCCACTCCTATTCAGGATGACATTCTACTGTTCGACTATAATGTTGAAGAAAGAGTCAATGACTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATTATGTGGACAATGGGAACAGACTTCCGTTATCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGGCGTGTCAATGCATTGTATTCCACACCATCTATCTACACTGATGCAAAATATGCCGCTAATGAGCAATGGCCTCTTAAAATTGATGATTTCTTCCCGTATGCAGATCACCCAAATGCATATTGGACTGGTTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGAGGGTGATGGGTGGTTACTATCAGGCAGCAAGGCAATTGGAATTTTTTAAAGGGAGGAACGAATCAGGACCAAACACTGATGCATTGGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCCGTTAGTGGCACAGAAAGACAGCATGTTGCTGCTGATTATGCAAAGCGACTCTCAATGGGCTATGCAGAGGCAGAAAGGTTGGTTGCATCTACACTTGCTTTCTTAATAAACGAAAGATTAAGTTCGCATGGGATGAACCTGGTGACAGACTTCCAGCAGTGTCCTCTTCTGAATATAAGCTACTGTCCTCCATCAGAAGCTACCTTGGGTAACGGAAAAAGTTTGGTGATCGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAGGAACTAATTCGAATTCCTGTTTCCACTGGAGAGGTTTTTGTCCAGGATTCTGCTGGGAAGGAAATTGAATCTCAACTTCTCCCTCTATCCAATGCTACTTTCCGTTTGAGAAACATTTATGCCGAAGCATATTTAGGAAAAAATCCTGCTGGAGAACTCAAGTATTGGCTTGCATTTCCAGTATCTGTACCTCCCCTTGGTTTCAACACTTATGTAGTGTCAAGGCCTAACCAGACAGGTCATAGTTCGACTATCTCAAAGGTGTACAGACCAGAAGGAACTACAAATAGTAACATAGAAGTTGGTCAAGGGAATCTGAAACTACTTTATTCTGCTGATGAAGGAAAACTGACTCATTATGTTAATAGTAGGAATCTTGTTACAGCATCAGTTGAACAATCATACAGTTATTATTCTGGAAATGATGGGACTGACAAAAACCCTCAGGCCTCTGGGGCATACATCTTCCGTCCGAACGGTTCATTTCCCATTACATCTGATCACAAGGTATCGTTCACTGTCCTGCATGGTCCTATACTGGATGAAGTACATCAACAGCTCAACCCATGGGTATCTCAGATTACGAGAATATATAAGGCAAAGGAGCACGCTGAAGTTGAGTTCACAATTGGGCCTATACCTGTCGATGATGGCATTGGGAAAGAAATTATTACTCAATTTGCAACTACAATGGAGACCAACAAGACATTCTACACAGATTCTAATGGGCGTGACTTCATTAAAAGGATACGAGATTTCAGGAGCGATTGGGATCTACAAGTGAACCAACCCACAGCTGGAAACTATTACCCAGTTAATTTGGGAATATACATACAAGATAGCAGTATGGAACTCTCAGTGTTGGTCGACCGCTCTGTTGGGGGTTCCAGCTTGGCAGATGGTCAAATAGAACTGATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTTGGTGAGGTACTCAACGAAACAGTTTGCGTTGCTGACAACTGTGAAGGTTTAACCATTCAAGGAAAACTATACCTTAGAATTGATCGTATAGGTGAAGGTGCTAAATGGCGTCGTACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAACAGGATGGGGATAATTTGGTGCATTTCCAACAATCAACATTTTACGGCATAGATTCTTCCTACAGTTTACCAAACAACACTGCTCTTTTAACCCTCCAGGAATTTGGAAATGGCAAAGTGCTCCTAAGATTGGCTCACCTTTACGAGCTTGGAGAGGACAAAGAATACTCAGTAAAGGCAAGTGTGGAATTGAAAAAGCTGTTTCCTAACAAGAAGATAAGCAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAACTGAAATGGAAAAGAAGAAATTGGCCTGGAAAGTAGAAGGCTCCACTGGAGAACCTAAAGTGGTGAGAGGAGGACCTGTTGATCCTACAAAGCTGGTGGTTGAACTTGCTCCAATGGAGATTCGAACATTCTTTATTGACTTTAGTCCTCTCCAAACAGTTTCTGCAGCAGAAAATCATGTAGCAGTGTAA 3066 0.4295 MANAAVLFAVFLAAIWVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGGNNSIRGACVQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKTPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVVWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSTPIQDDILLFDYNVEERVNDFVSAALAQANVTKTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEQWPLKIDDFFPYADHPNAYWTGYFTSRPALKGYVRVMGGYYQAARQLEFFKGRNESGPNTDALADALAIAQHHDAVSGTERQHVAADYAKRLSMGYAEAERLVASTLAFLINERLSSHGMNLVTDFQQCPLLNISYCPPSEATLGNGKSLVIVVYNPLAWKREELIRIPVSTGEVFVQDSAGKEIESQLLPLSNATFRLRNIYAEAYLGKNPAGELKYWLAFPVSVPPLGFNTYVVSRPNQTGHSSTISKVYRPEGTTNSNIEVGQGNLKLLYSADEGKLTHYVNSRNLVTASVEQSYSYYSGNDGTDKNPQASGAYIFRPNGSFPITSDHKVSFTVLHGPILDEVHQQLNPWVSQITRIYKAKEHAEVEFTIGPIPVDDGIGKEIITQFATTMETNKTFYTDSNGRDFIKRIRDFRSDWDLQVNQPTAGNYYPVNLGIYIQDSSMELSVLVDRSVGGSSLADGQIELMLHRRLLHDDARGVGEVLNETVCVADNCEGLTIQGKLYLRIDRIGEGAKWRRTVGQELYSPLLLAFTEQDGDNLVHFQQSTFYGIDSSYSLPNNTALLTLQEFGNGKVLLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLAWKVEGSTGEPKVVRGGPVDPTKLVVELAPMEIRTFFIDFSPLQTVSAAENHVAV* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1682 1021 Gene3D Glycoside hydrolase family 38, central domain 317 395 IPR037094 GO:0004559|GO:0006013
Lja1g1682 1021 SUPERFAMILY Families 57/38 glycoside transferase middle domain 352 446 IPR028995 -
Lja1g1682 1021 Gene3D - 883 1008 - -
Lja1g1682 1021 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 898 1003 IPR041147 -
Lja1g1682 1021 SUPERFAMILY Glycoside hydrolase/deacetylase 25 351 IPR011330 GO:0005975
Lja1g1682 1021 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
Lja1g1682 1021 PANTHER ALPHA-MANNOSIDASE 9 1010 - -
Lja1g1682 1021 Gene3D - 474 598 IPR013780 -
Lja1g1682 1021 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Lja1g1682 1021 Pfam Glycosyl hydrolases family 38 C-terminal domain 601 815 IPR011682 GO:0004559|GO:0006013
Lja1g1682 1021 Gene3D Glycoside hydrolase family 38, central domain 396 450 IPR037094 GO:0004559|GO:0006013
Lja1g1682 1021 PANTHER ALPHA-MANNOSIDASE 9 1010 - -
Lja1g1682 1021 SUPERFAMILY Galactose mutarotase-like 451 1006 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja1g1682 1021 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
Lja1g1682 1021 CDD GH38N_AMII_LAM_like 36 312 - -
Lja1g1682 1021 Gene3D - 599 863 - -
Lja1g1682 1021 Pfam Alpha mannosidase middle domain 353 445 IPR015341 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1682 Lja-Chr1 18544780 18557481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1682 1 946 Glycoside Hydrolase AT3G26720 73.629 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1682 K01191 - gmx:100795651 1834.69