Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02390 ATGGCAAAAAGATTGCTCTTTTTGTTGACCCTTTTGGGAATACTCCTTTGTGGGAATTCCAAGTTTATGGTTTATAACACTTCTCAGGGCATAGTCCAAGGGAAGGTCAATGTTCATCTTGTTGCTCATACCCATGATGATGTTGGTTGGTTGAAGACTGTGGATCAGTACTATGTTGGTTCTAATAATTCTATTCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCCATGGTTCATGCTCTGTTGGCTGACAAGAACCGGAAATTTATCTATGTTGAGATAGCCTTTTTCCAGCGATGGTGGAGAGATCAGAGTGAAGCTGTTCAGGATGTCGTTAAGAAATTTGTTAGTTCAGGTCAACTAGAGTTCATAAATGGGGGCATGTGTATGCATGATGAGGCAGTAACTCATTACATAGACATGATTGATCAGACTACACTTGGACATCGGTTTCTGAAAGAGGAGTTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTGCAGGCTTACTTGTTGGGAGCCGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGATTACCAAGATAGAGCTAAACGCAAGAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCATCTGCTGAGATCTTTGCTGGTGCATTCCCTGAGAATTATGAACCTCCCTCTGGATTTTACTTTGAAGTTAATGATAACTCGCCAATAGTTCAAGATAATTTGGATTTGTTTGATTACAATGTCCAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATCACAGGCAAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTCAAGTATCAATATGCACATACATGGTTCCGACAGCTGGACAAGCTTATTCATTATGTGAACAAGGATGGACGGGTCAATGCTCTGTACTCTACTCCATCCATATATACTGATGCAAAATATGCTACAAATGAGTCCTGGCCAATCAAGACAGATGATTTCTTTCCTTATGCAGATCGTGCAAATTCTTACTGGACTGGATACTTTACCAGTAGGCCGGCTATCAAACGATATGTCAGACTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAGTATTTTAGAGGGAGAATGAACTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAACATCATGATGCGGTCACTGGCACAGAAAAGCAGCATGTGGCCAATGATTATTCTAAACGATTGTCAATAGGCTATAAGGAGGCAGAGGAATTGGTTTCATCATCACTAGCTAGCTTGGTTGAGTCGACATTACTTACTAGATCTCGGAACCCAGTTACAAAGTTTCAACAATGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATCTGGTTCAAGGAAAGAGTTTGGTTATTGTGGTTTACAACTCTCTTGGTTGGAAGAGGAATGAAGTGATTCAAATTCCTGTGAGTGATGTCATTCTGGTTATCGATGGCAATGTTACAGTTCATGACTCTAATGGTATAGAGATAGAATCTCAACTTCTTCCTCTGGCTGAGGCATTTGTAGACTTAAGAAACTACTATATCAAGGCATATTTGGGACAAACTCCACCCAAGACACCCAAGTATTGGCTAGCATTTTCAGTTTCTGTACCACCACTTGGTTTCAGCACCTACACTGTCTCAACTGCCAAAAGGACAGGTTCCACCAGATCATCAGTATATTCATATCAAAGTGGTGAAAGTGAAAAATCTAGATTTGAAGTTGGTCAAGGAAATTTGAAGCTTACGTTTTCTACAAATCAAGAAAAATCTACCAATTATGCTAATACAAGAAACTTGGTGGAGGAAAAGGCTGAACTGAGTTACCTTTACTATTCAGGATATAATGGAAGCCATCAAAAAGATCCACAGAACTCTGGGGCCTACATCTTCCGTCCAAATGGCACATATCCCATAAACCATGAAAGACAGGTTCCAATGACTGTTCTGCGTGGACCGATACTAGATGAAGTGCATCAACAAATCAATCCATGGATATATCAGATTACCAGACTGCACAAAGGAAAGGAGCATGTCGAAGTAGAGTTTATTGTTGGACCTATACCTATTGAAGATGGAATTGGTAAAGAAGTTTCCACCCAGATTTCAACTACTATGAAAACCAACAAAACCTTTTACACAGATTCTAATGGGTGTGACTTTATCAAAAGGATACGTGACTACAGAACAGATTGGGACCTGGAAGTGAACCAGCCTGCTGCTGGAAATTATTACCCTATTAACCTTGGGATATACACGAAGGATAATAAGAAAGAATTCTCAGTTTTGGTGGATAGATCTATTGGAGGATCCAGCTTAAAAGATGGACAAATAGAGCTGATGGTCCACAGGAGATTGCTACTTGATGATTCAAGAGGTGTTGCAGAGGCCTTAAATGAAACAGACTGTGTAGCTGATGATTGCAGGGGTCTAACTGTCCAAGGTAAATTTTACTATAGAATAGATCCCTTGGGGGAGGGAGCTAAGTGGCGCCGTACTTTTGGCCAGGAAATATATTCTCCACTTCTGTTAGCCTTTTCTGAAAAGGATGATAAAGATGACTGGATGAATTCCCATGTACCAACATTTTCAGGAATTGACACTTCATACACATTACCTGATAATGTTGCTATTATAACGTTACAGGAACTTGATGATGGGACAGTTCTCCTTCGGTTAGCGCATTTATATGAGATTGAAGAAGACAAGGATCTCTCTGTAATGTCAACTGTGGAGCTGAAAAAGCTCTTCCATGGGAAGAAGATCAAAGAGGTGAAAGAGATGAACTTATCTGCCAATCAAGAAAGGACAGAGATGGAGAAAAAGAAACTTGTTTGGAAAGTAGAAGGCTCCTCTGGAAATGGACATGTTTCAAGAGGAGGGCCAGTTGTTCCAGAAAAGCTAAATGTGGAGCTTGCTCCAATGGAAATCCGCACTTTCATCATTTACTTTGATCATAACCATATTTTAGAATTTTAG 3069 0.4044 MAKRLLFLLTLLGILLCGNSKFMVYNTSQGIVQGKVNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEIAFFQRWWRDQSEAVQDVVKKFVSSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSAEIFAGAFPENYEPPSGFYFEVNDNSPIVQDNLDLFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYATNESWPIKTDDFFPYADRANSYWTGYFTSRPAIKRYVRLMSGYYLAARQLEYFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLASLVESTLLTRSRNPVTKFQQCPLLNISYCPASEVDLVQGKSLVIVVYNSLGWKRNEVIQIPVSDVILVIDGNVTVHDSNGIEIESQLLPLAEAFVDLRNYYIKAYLGQTPPKTPKYWLAFSVSVPPLGFSTYTVSTAKRTGSTRSSVYSYQSGESEKSRFEVGQGNLKLTFSTNQEKSTNYANTRNLVEEKAELSYLYYSGYNGSHQKDPQNSGAYIFRPNGTYPINHERQVPMTVLRGPILDEVHQQINPWIYQITRLHKGKEHVEVEFIVGPIPIEDGIGKEVSTQISTTMKTNKTFYTDSNGCDFIKRIRDYRTDWDLEVNQPAAGNYYPINLGIYTKDNKKEFSVLVDRSIGGSSLKDGQIELMVHRRLLLDDSRGVAEALNETDCVADDCRGLTVQGKFYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNSHVPTFSGIDTSYTLPDNVAIITLQELDDGTVLLRLAHLYEIEEDKDLSVMSTVELKKLFHGKKIKEVKEMNLSANQERTEMEKKKLVWKVEGSSGNGHVSRGGPVVPEKLNVELAPMEIRTFIIYFDHNHILEF* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02390 1022 FunFam Alpha-mannosidase 396 450 - -
Rops8g02390 1022 PANTHER ALPHA-MANNOSIDASE 8 1016 - -
Rops8g02390 1022 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Rops8g02390 1022 FunFam Alpha-mannosidase 473 604 - -
Rops8g02390 1022 CDD GH38N_AMII_LAM_like 37 312 - -
Rops8g02390 1022 SUPERFAMILY Galactose mutarotase-like 449 1014 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops8g02390 1022 Gene3D - 603 870 - -
Rops8g02390 1022 Gene3D Glycoside hydrolase family 38, central domain 396 450 IPR037094 GO:0004559|GO:0006013
Rops8g02390 1022 FunFam Alpha-mannosidase 891 1016 - -
Rops8g02390 1022 SUPERFAMILY Families 57/38 glycoside transferase middle domain 352 446 IPR028995 -
Rops8g02390 1022 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 905 1011 IPR041147 -
Rops8g02390 1022 Gene3D Glycoside hydrolase family 38, central domain 317 395 IPR037094 GO:0004559|GO:0006013
Rops8g02390 1022 FunFam Alpha-mannosidase 315 395 - -
Rops8g02390 1022 FunFam Alpha-mannosidase 604 870 - -
Rops8g02390 1022 Gene3D - 473 601 IPR013780 -
Rops8g02390 1022 Pfam Glycosyl hydrolases family 38 C-terminal domain 607 822 IPR011682 GO:0004559|GO:0006013
Rops8g02390 1022 SUPERFAMILY Glycoside hydrolase/deacetylase 25 349 IPR011330 GO:0005975
Rops8g02390 1022 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
Rops8g02390 1022 Pfam Alpha mannosidase middle domain 353 445 IPR015341 GO:0004559|GO:0006013
Rops8g02390 1022 Coils Coil 952 972 - -
Rops8g02390 1022 Gene3D - 891 1018 - -
Rops8g02390 1022 FunFam Alpha-mannosidase 36 316 - -
Rops8g02390 1022 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02390 Rops-Chr8 55299147 55313576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02390 1 928 Glycoside Hydrolase AT5G13980 71.567 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02390 K01191 - gmx:100776282 1800.79