LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0398	ATGGGTGAACACGCAATTCCTCAATGTTTTCAGCATCTAATGGCGAAAAAATTGCTCTTTTTGTTGACCCTTTTGGAAATTCTCCTTTGTGGGCAATCCAAGTTTATGGTGTACAACACTTCCCAAGGCATAGTCCCTGGGAAGCTCAATGTTCATCTGGTAGCTCACACCCACGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCCAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGTCTTGGACTCCATGGTGCATGCTCTTCTGGCTGACAAGAACAGAAAATTTATCTATGTTGAGATGGCCTTTTTCAAGCGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGATGTAGTTAAGAAACTCGTTAGTTCGGGTCAACTAGAGTTCATAAATGGTGCCATGGCTATGCATGATGAGGCAGTAACACATTACATAGACATGATTGATCAGACTGCACTTGGACATCAATTTCTAAAAGAGGAATTTGGTGTGACTCCCAGAATTGGTTGGCAAATTGATCCTTTCGGACATTCTGCTGTGCAGGCTTACCTGTTGGGAGCTGAAGTTGGTTTTGACTCATTTTTCTTTGGTCGGATAGATTACCAAGATAGGGCTAAGCGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCCCCTCTGCCCAGATCTTTGCTGGAGCATTCCCAGAAAATTATGAGCCACCTTCAGGATTTTACTTTGAAGTTAATGATGCCTCACCAATAGTTCAAGATAACATGCAATTGTTTGATTACAATGTCCAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATTACAGGCAAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGACAGCTGGACAAGCTTATTCATTATGTAAACATGGATGGACGCGTCAATGCTCTGTACTCTACACCATCCATATATACTGATGCAAAATATGCTACAAATGAGTCCTGGCCAATCAAGACTGATGATTTTTTTCCTTATGCAGATCGAGCAAATGGTTACTGGACAGGATACTTTACCAGTAGGCCAGCTATCAAACGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGGGGGAGAGTGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCGCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCCAATGATTATTCTAAGCGATTGTCAATAGGCTACAAGGAGGCAGAGGAATTGGTTTCATCATCGCTGGCTTGCTTGGTTGAGTCACCGTTGCTTACTAGATGTCAAAATCCAGTTACAAAGTTTCAACAATGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATCTGGTTCAAGGAAAGAATTTGGTTATTGTAGTTTACAACTCTCTAGGTTGGAGGAGGAATGAAGTGATTCGGATTCCGGTTATTGAGGCCAATGTTAGAGTTCATGACTCTAATGGTATAGAAATAGAATCTCAACTTCTTCCTCAGGCTGAGAAATATGTAGACTTAAGAAATTACTACGTGAAGGCATATCTAGGACAAACTCCACCCAAGGCACCTAAGTACTGGCTTGCATTTACAGTTTCTGTACCGCCACTTGGTTTTAGCACATACACTGTCTCAACTGCCAAAAGGACAGGGTCCACAAGATCATCAGTAGATATATATAAGAGTAGTGAAAAGTCTAAATTTGATGTTGGTCAAGGAAATTTGAAGCTTACATTTTCTATGGATCAAGAGAAGTGTACCAATTATGTTAATATAAGAAACCTGGTCGAGGAGCAGGTTGAACTAAGTTACCTATACTATTCTGGATACAATGGAACTAATCAAAAAGATCCACAGAATTCTGGGGCCTATATCTTCCGTCCAAATGGCACACATCCCATAAACCATGAAAAAAAGGTTCCATTGACTGTTTTGCATGGACCTGTGCTAGATGAAGTGCACCAACAAATCAATCCATGGATATATCAGATTACCAGACTATACAAAGGAAAGGAGCATGTTGAAGTGGAGTTTATTGTTGGCCCTATACCAATTGAAGATGGAATTGGCAAAGAAGTTGCCACTCGGATTTCAACTACTATGGAAACCAACAACACGTTTTACACGGATTCTAATGGACGTGATTTTATCAAAAGGATACGAGACTACAGAACAGACTGGGACCTAGAAGTGAACCAACCTGCTGCTGGAAATTATTACCCTATTAATCTTGGGATATACACAGAGGATAATAAAACAGAATTCTCAGTTTTGGTGGATAGAGCTATTGGAGGATCCAGCTTACAAGATGGACAAATAGAGCTGATGGTTCACAGGAGATTACTACTTGATGATTCAAGAGGTGTTGATGAGGCTCTAAATGAAACAGATTGTGTCGGTGATGATTGCAGGGGTCTAACTGTCCAAGGTAAATTTTACTACAGAATAGACCCCTTGGGTGAGGGCGCTAAGTGGCGTCGTACTTTTGGCCAGGAAATATATTCTCCACTTCTGTTAGCCTTTGCTGAAAAGGATGATAAAGATGATTGGATGAATTCCCGTGTATTAACATTTTCAGGAATTGATTCTTCTTATGCATTACCTGATAATATTGCTATTATAACATTACAGGAACTTGATGATGGGACAGTTCTCCTTCGGTTAGCACATCTATATGAGATTGAAGAAGACAAAGATCTCTCTGTAATTGCAACTGTGGAGCTGAAAAAGCTCTTGCCTGGGAGGAAGATCAAGGAGGTGAAGGAGATGAGTTTATCTGCCAATCAAGAAAGGACAGAGATGGAGAAGAAAAGACTTGCTTGGAAAGTAGAAGGCTCTTCTGGAAGTAAGCAAGTTTCAAGGGGAGGGCCAGTTGATCCAAAAGAGCTAAACGTGGAGCTTGCTCCTATGGAAATTCGCACTTTTATCCTTGACTTTGATGATGTGTCTAACCAACTTTTTGATGCATTGTAG	3093	0.408	MGEHAIPQCFQHLMAKKLLFLLTLLEILLCGQSKFMVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFKRWWRDQSEAVQDVVKKLVSSGQLEFINGAMAMHDEAVTHYIDMIDQTALGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSFFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGPSAQIFAGAFPENYEPPSGFYFEVNDASPIVQDNMQLFDYNVQDRVNDFVAAALLQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKLIHYVNMDGRVNALYSTPSIYTDAKYATNESWPIKTDDFFPYADRANGYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFRGRVNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLACLVESPLLTRCQNPVTKFQQCPLLNISYCPASEVDLVQGKNLVIVVYNSLGWRRNEVIRIPVIEANVRVHDSNGIEIESQLLPQAEKYVDLRNYYVKAYLGQTPPKAPKYWLAFTVSVPPLGFSTYTVSTAKRTGSTRSSVDIYKSSEKSKFDVGQGNLKLTFSMDQEKCTNYVNIRNLVEEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTHPINHEKKVPLTVLHGPVLDEVHQQINPWIYQITRLYKGKEHVEVEFIVGPIPIEDGIGKEVATRISTTMETNNTFYTDSNGRDFIKRIRDYRTDWDLEVNQPAAGNYYPINLGIYTEDNKTEFSVLVDRAIGGSSLQDGQIELMVHRRLLLDDSRGVDEALNETDCVGDDCRGLTVQGKFYYRIDPLGEGAKWRRTFGQEIYSPLLLAFAEKDDKDDWMNSRVLTFSGIDSSYALPDNIAIITLQELDDGTVLLRLAHLYEIEEDKDLSVIATVELKKLLPGRKIKEVKEMSLSANQERTEMEKKRLAWKVEGSSGSKQVSRGGPVDPKELNVELAPMEIRTFILDFDDVSNQLFDAL*	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g0398	1030	Pfam	Glycosyl hydrolases family 38 N-terminal domain	50	361	IPR000602	GO:0004559\|GO:0006013
	Gso16g0398	1030	Gene3D	Glycoside hydrolase family 38, central domain	409	462	IPR037094	GO:0004559\|GO:0006013
	Gso16g0398	1030	SUPERFAMILY	Glycoside hydrolase/deacetylase	38	362	IPR011330	GO:0005975
	Gso16g0398	1030	Gene3D	-	896	1022	-	-
	Gso16g0398	1030	Pfam	Glycosyl hydrolases family 38 C-terminal domain	613	827	IPR011682	GO:0004559\|GO:0006013
	Gso16g0398	1030	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	365	459	IPR028995	-
	Gso16g0398	1030	PANTHER	ALPHA-MANNOSIDASE	27	1021	-	-
	Gso16g0398	1030	CDD	GH38N_AMII_LAM_like	49	325	-	-
	Gso16g0398	1030	Pfam	Alpha mannosidase middle domain	367	458	IPR015341	GO:0004559\|GO:0006013
	Gso16g0398	1030	PANTHER	ALPHA-MANNOSIDASE	27	1021	-	-
	Gso16g0398	1030	SUPERFAMILY	Galactose mutarotase-like	463	1019	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Gso16g0398	1030	Gene3D	-	486	608	IPR013780	-
	Gso16g0398	1030	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	910	1016	IPR041147	-
	Gso16g0398	1030	Gene3D	Glycoside hydrolase 38, N terminal domain	49	329	IPR027291	-
	Gso16g0398	1030	Coils	Coil	957	977	-	-
	Gso16g0398	1030	SMART	Alpha_mann_mid_2	366	440	IPR015341	GO:0004559\|GO:0006013
	Gso16g0398	1030	Gene3D	Glycoside hydrolase family 38, central domain	330	408	IPR037094	GO:0004559\|GO:0006013
	Gso16g0398	1030	Gene3D	-	609	875	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0398	Gso-Chr16	4518024	4534295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g0398	14	933	Glycoside Hydrolase	AT5G13980	71.845	0.0	1400

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0398	K01191		-	gmx:100776282	2031.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g0892	19	35141012	35144469	Gso16g0398	16	4518024	4534295	GST