LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g02118	ATGGTCAATGCGGTGGCAGTGTTATTCGCCGTTTTGGTGGCGGCGATTTGGGTTGCGGAATCAGAGTACATAGAGTACAACACGACGCAGAGGATAGTTCCAGACAAATTAAACGTGCACTTGGTACCTCACTCCCACGATGATGTTGGCTGGCTCAAGACCGTCGATCAGTACTACGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTGCAGAACGTGCTGGATTCTGTGATATCTGCGCTGTTGGAGGACAAGAATCGCAAGTTCATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGACAGCAAAGTAAAGCAATGAAAATTAAAGTCAAGGAACTTGTCAACTCGGGTCAGTTGGAATTCATAAATGGTGGTATGTGTATGCATGATGAGGCCACCCCGCATTACATTGATCTAATTGACCAGACCACTCTTGGGCATCAATTTATCAAAGAGGAATTTGGTAAGGTTCCAAGAGTTGGTTGGCAGATTGACCCATTTGGCCATTCTGCAGTTCAGGCTTACTTACTTGGTGCCGAGCTTGGATTCGATTCACTCTTTTTTGCTAGAATCGATTACCAAGATAGAGCCAAACGATTGAAGGAGAAGACTCTTGAGGTTATTTGGCAGGGTTCCAGGTCTCTTGGCTCTTCTTCACAAATATTTACTGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACATTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTACTATTTGACTATAATGTTCAAGAAAGGGTCAACGATTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATTATGTGGGCAATGGGGACAGATTTCCGTTATCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGACGTGTCAATGCATTATATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCTAATGAGTATTGGCCTCTTAAAGTTGATGATTTCTTCCCGTATGCAGATCACCCAAATGCATATTGGACTGGATATTTTACAAGTAGGCCAGCTTTGAAGGGCTATGTGAGAGTGATGAGTGCTTACTATCAGGCAGCAAGGCAATTGGAATATTTTAAAGGGAGGAATGAAACAGGACCAAATACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGACGCAGTTAGTGGCACAGAAAGGCAGCACGTTGCTTCTGATTATGCACTGCGACTCTCAATAGGATATAAAGAGGCAGAAAGGTTGGTTGCATCTGCACTTGCTTCCTTGGTAAACCAAAGATTAAGTTCGCATAGGGTGAACCCAGTGACAGACTTCCAGCAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCATCAGAAGCTACATTGATTAATGGAAAGAGCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTTTCCACTGGACAGGTTTTTGTTCAGGATTTTGCTGGGAAGAAAATTGAGTCTCAGCTTCTGCCTCTGTCTAATGCTACTTTGACTATGAGAAAACATTATGTCAGAGCATATATTGGAAAAGCTCCTGGGGGCGACAAACTCAAGTATTGGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAACACCTATATAGTGTCAAGCTCTAAACAGTCAAGTCATAGTTCAACTATCTCAAAGATGTACAGATCAGAAGGAAGCACTAATAAAAGCATAGAAGTTGGACAAGGGAATCTAAAGCTACTTTATTCAGCAGATGAAGGAAAACTGACTCACTATGTTAACAGTAGAACTCTGGTTACAGCATCAGTTGAACAATCATACAGTTATTATTCTGGAAACGATGGGACTGATAAAGATCCTCAGGCTTCTGGGGCATATGTCTTCCGTCCAAATGGCTCGTTTCCCATTAAATCAGATCATCAGGCATCTTTTACTGTCCTGCGTGGTCCAATATTGGATGAAGTACATCAACAGCTCAATCCATGGGTATCCCAGATTACAAGGATATTCAAGGAAAAAGAGCATGCTGAAATTGAGTTCACAGTTGGGCCTATACCTGTGGATGATGGCATTGGGAAAGAAATTATTGCTCAATTTAAAACTACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGACGTGACTTCATTAAGAGGATTCGAGATTTCAGGACTGACTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTATCCCGTTAATTTAGGAATATATGTGCAAGATAGTAGTATGGAATTCTCTGTGTTGGTGGACCGCTCATTTGGAGGTTCCAGCTTGGAGGATGGCCAAATGGAGCTGATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTAGGTGAGGTACTCAATGAAACAGTTTGCATTGCTGATAAGTGTGAGGGCTTAACGATTCAAGGAAAACTGTACCTTAGAATTGACCATAAAGGTGAAGGTGCTAACTGGCGTCGCACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAACAGGATGGGGATAATTGGTTGCATTTCAGTCCATCAACATTTTCTGGCATAGATTCTTTCTACAGTTTACCTGACAACACTGCTCTTTTAACCCTCCAGGTATGCAAGGGAGAACAATAG	2739	0.4224	MVNAVAVLFAVLVAAIWVAESEYIEYNTTQRIVPDKLNVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSKAMKIKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEVIWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTKTNHIMWAMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAANEYWPLKVDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSAYYQAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSIGYKEAERLVASALASLVNQRLSSHRVNPVTDFQQCPLLNISYCPPSEATLINGKSLVIVVYNPLAWKREDVIRIPVSTGQVFVQDFAGKKIESQLLPLSNATLTMRKHYVRAYIGKAPGGDKLKYWLAFPVSVPPLGFNTYIVSSSKQSSHSSTISKMYRSEGSTNKSIEVGQGNLKLLYSADEGKLTHYVNSRTLVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFPIKSDHQASFTVLRGPILDEVHQQLNPWVSQITRIFKEKEHAEIEFTVGPIPVDDGIGKEIIAQFKTTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSSMEFSVLVDRSFGGSSLEDGQMELMLHRRLLHDDARGVGEVLNETVCIADKCEGLTIQGKLYLRIDHKGEGANWRRTVGQELYSPLLLAFTEQDGDNWLHFSPSTFSGIDSFYSLPDNTALLTLQVCKGEQ	912

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g02118	912	Gene3D	Glycoside hydrolase family 38, central domain	318	396	IPR037094	GO:0004559\|GO:0006013
	Pumo5g02118	912	Gene3D	Glycoside hydrolase family 38, central domain	397	452	IPR037094	GO:0004559\|GO:0006013
	Pumo5g02118	912	Pfam	Alpha mannosidase middle domain	354	446	IPR015341	GO:0004559\|GO:0006013
	Pumo5g02118	912	PANTHER	ALPHA-MANNOSIDASE	7	909	-	-
	Pumo5g02118	912	FunFam	Alpha-mannosidase	37	317	-	-
	Pumo5g02118	912	FunFam	Alpha-mannosidase	474	600	-	-
	Pumo5g02118	912	SUPERFAMILY	Galactose mutarotase-like	454	909	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Pumo5g02118	912	FunFam	Alpha-mannosidase	397	452	-	-
	Pumo5g02118	912	CDD	GH38N_AMII_LAM_like	37	313	-	-
	Pumo5g02118	912	FunFam	Alpha-mannosidase	316	396	-	-
	Pumo5g02118	912	SUPERFAMILY	Glycoside hydrolase/deacetylase	26	352	IPR011330	GO:0005975
	Pumo5g02118	912	Pfam	Glycosyl hydrolases family 38 N-terminal domain	38	349	IPR000602	GO:0004559\|GO:0006013
	Pumo5g02118	912	Gene3D	-	473	600	IPR013780	-
	Pumo5g02118	912	SMART	Alpha_mann_mid_2	354	428	IPR015341	GO:0004559\|GO:0006013
	Pumo5g02118	912	Pfam	Glycosyl hydrolases family 38 C-terminal domain	603	817	IPR011682	GO:0004559\|GO:0006013
	Pumo5g02118	912	FunFam	Alpha-mannosidase	600	865	-	-
	Pumo5g02118	912	Gene3D	Glycoside hydrolase 38, N terminal domain	37	317	IPR027291	-
	Pumo5g02118	912	Gene3D	-	601	865	-	-
	Pumo5g02118	912	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	353	448	IPR028995	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g02118	Pumo-Chr5	57714852	57726595	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g02118	7	906	Glycoside Hydrolase	AT3G26720	73.333	0.0	1411

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g02118	K01191		-	gmx:100795651	1753.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo5g02118	5	57714852	57726595	Pumo5g02118	5	57714852	57726595	ECH