LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g2169	ATGGAGAAAAAATTCATCTTTTTGTTGACCCTTTTGGGTATACTCTTTTATGGAGGACATTCCAAGTTTATGGTGTATAACACATCTCAGGGTATAGTCTCTGGGAAACTCAATGTTCATCTGGTTGCTCATACTCATGATGATGTTGGCTGGTTGAAGACTGTTGATCAGTACTATGTTGGTTCTAACAATTCCATTCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCTATGGTTTATGCTCTATTGGCTGATAAGAACAGGAAATTTATCTATGTGGAGATGGCCTTTTTCCAGCGATGGTGGAGAGATCAGAGTGAAGCTATTCAGAATATCGTTAAGCAGTTTGTTAGTTCGGGTCAATTAGAATTCATAAATGGGGGCATGTGTATGCATGATGAGGCAGTACCCCATTACATAGACATGATTGATCAGACTACACTTGGACACCGATTTCTGAAAGAGGAGTTTGGCGTGACTCCCAGAATCGGTTGGCAAATTGATCCCTTTGGCCATTCTGCTGTGCAGGCTTACTTATTGGGAGCTGAAGTTGGTTTTGATTCACTTTTCTTTGGTAGGATAGATTATCAGGATAGAACTAAACGCAAAAAGGAGAAGAGTCTCGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCGTCTGCTCAGATCTTTGCTGGTGCATTCCCTAAGAACTATGAGCCTCCTTCTGGATTTTACTTTGAAGTTAATGATGATTCCGAAATAGTTCAAGATAACATGGATTTGTTCGATTACAACGTGCAAGATAGAGTGGATGACTTTGTTGCTGCTGCACTATCACAAGCAAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTATCAATACGCACATACATGGTACCGGCAATTGGACAAGCTTATTCATTATGTGAACAAGGATGGACGTGTCAATGCTCTGTATTCTACGCCATCCATATATACTGACGCTAAATATGCTGCAAATGAGTCTTGGCCAATCAAAACCGGCGATTTCTTCCCTTACGCGGATCGTGCAAATGGTTTCTGGACAGGATACTTTACCAGTAGGCCAGCTTTGAAACGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTTGAATATTTTAGAGGGCGAAAGAACTCGGGGCCAAATACAGATTCATTAGCGGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCCAATGATTATGCTAAGCGGTTGGCGATAGGCTACAAGGAGGCAGAGGAACTGGTTTCATCATCGCTGGCTTGCTTGGCTGAATCAACGTTGCTTACTGGGTGTCAGGACCCAGTTACAAAGTTTCAACAATGCCCGCTTTTGAACATAACTTATTGTCCTGCAACAGAAGTTGAACTGGTTCAAGGAAAGAGTTTGGTTATCGTGGTTTATAACTCCCTTGGTTGGAAGAGGAATGAAGTGATTCGAATTCCTGTTATTGATGGCGATGTTACAGTTCATGACTCTAACGGTGTAGAAATAGAATCTCAAATTCTACCTCTGGCTGAGGCATTTGTAAATTTAAGAAACTACTATGTCAAAGCATATTTGGGAGAAAATCCATCCAAGACACCGAAGTACTGGCTTGCATTTACGGTTTCTGTACCACCGTTTGGTTTTAGCACCTACACTGTCTCGACTGCCAAAAAAACAGGTTCCACCAGATCATCTGTATATGCGCATCAAAGTCGTGAAAAGTCTTCTATTGGTCAAGGAAATTTGAAGCTTACATTTTCTACAGATCAAGAAAAACGGACCAATTATGTTAATGCAAGAAACATGGTTGAGGAACAGGTTGAACTGAGTTACCTTTACTATTCTGGATATAACGGAACCGATCAAAAAGATCCACAGAATGCCGGGGCCTATATCTTCCGTCCAAATGGCACACATCATATAAACCATGAAAAACAGGTTCCGGTGACTGTTCTGCATGGACCGATAATAGATGAAGTTCATCAACAAATCAATCCATGGATATATCAGATTACCCGACAGTACAAAGGAAAGGAACATGTTGAAGTCGAGTTTATTGTTGGTCCTATACCTATTGACGATGGAATTGGTAAAGAAGTTGCCACTCGAATTTCAACTACTATGGAAACCAATAAAACCTTTTACACAGATTCTAATGGGCGTGATTTTATCGAAAGGGTACGGGACTACAGAACAGACTGGGACTTGGAAGTGAACCAGCCCGTTGCCGGAAATTATTATCCAATTAACCTCGGGATATACATAAAGGATAATAAAACAGAATTCTCGGTTTTGGTGGATAGAGCTATCGGAGGATCCAGCTTAGAAGATGGACAAATCGAGTTGATGCTCCACAGGAGATTGTTGCTTGATGATTCAAGAGGTGTCGCAGAGGCCCTAAATGAAACAGACTGTGTTGCTGACAATTGCAAGGGTCTAACTGTCCAAGGTAAATATTATTATAGAATAGACCCCTTGGGCGAGGGAGCTAAGTGGCGCCGTACTTTCGGTCAGGAAATATATTCTCCACTTTTGTTGGCCTTTTCTGAAAAGGATGATAAAGATGACTGGATGAATAGCCGTGTAACAACATTTTCCGGATTTGATTCTTCTTACACATTACCAGAAAACATTGCTATTATAACATTACAGGAATTTGATCACGGGACAGTTCTCCTTCGATTAGCGCATTTATATGAGATTGAAGAAGACAAGGATATGTCTGTAATAACGAGTGTGGAATTGAAAAAGCTCTTCCCGGGAAAGAAGATCGAAGACGTGAAAGAGACGAGCTTATCTGCAAATCAAGAAAGGAAAGAGATGGAGAAGAAAAGACTTGTTTGGAAAGTAGAAGGATCCTCTGGAAATGAAGGTGTTTCAAGGGGAGGAGCAGTCGATCCAAAAGAGCTTACTGTGGAGCTTGCTCCAATGGAAATTCGCAGTTTTATGATTTACTTTGATTATAGTAACCATCTTTTTGATGCATTGTAG	3048	0.4114	MEKKFIFLLTLLGILFYGGHSKFMVYNTSQGIVSGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVYALLADKNRKFIYVEMAFFQRWWRDQSEAIQNIVKQFVSSGQLEFINGGMCMHDEAVPHYIDMIDQTTLGHRFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRTKRKKEKSLEVIWQGSKSLGSSAQIFAGAFPKNYEPPSGFYFEVNDDSEIVQDNMDLFDYNVQDRVDDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWYRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYAANESWPIKTGDFFPYADRANGFWTGYFTSRPALKRYVRLMSGYYLAARQLEYFRGRKNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYKEAEELVSSSLACLAESTLLTGCQDPVTKFQQCPLLNITYCPATEVELVQGKSLVIVVYNSLGWKRNEVIRIPVIDGDVTVHDSNGVEIESQILPLAEAFVNLRNYYVKAYLGENPSKTPKYWLAFTVSVPPFGFSTYTVSTAKKTGSTRSSVYAHQSREKSSIGQGNLKLTFSTDQEKRTNYVNARNMVEEQVELSYLYYSGYNGTDQKDPQNAGAYIFRPNGTHHINHEKQVPVTVLHGPIIDEVHQQINPWIYQITRQYKGKEHVEVEFIVGPIPIDDGIGKEVATRISTTMETNKTFYTDSNGRDFIERVRDYRTDWDLEVNQPVAGNYYPINLGIYIKDNKTEFSVLVDRAIGGSSLEDGQIELMLHRRLLLDDSRGVAEALNETDCVADNCKGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNSRVTTFSGFDSSYTLPENIAIITLQEFDHGTVLLRLAHLYEIEEDKDMSVITSVELKKLFPGKKIEDVKETSLSANQERKEMEKKRLVWKVEGSSGNEGVSRGGAVDPKELTVELAPMEIRSFMIYFDYSNHLFDAL*	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g2169	1015	SUPERFAMILY	Glycoside hydrolase/deacetylase	26	350	IPR011330	GO:0005975
	Psa3g2169	1015	Pfam	Glycosyl hydrolases family 38 C-terminal domain	597	813	IPR011682	GO:0004559\|GO:0006013
	Psa3g2169	1015	Gene3D	-	881	1011	-	-
	Psa3g2169	1015	Coils	Coil	943	963	-	-
	Psa3g2169	1015	Gene3D	-	474	596	IPR013780	-
	Psa3g2169	1015	PANTHER	ALPHA-MANNOSIDASE	16	1007	-	-
	Psa3g2169	1015	Gene3D	Glycoside hydrolase family 38, central domain	318	396	IPR037094	GO:0004559\|GO:0006013
	Psa3g2169	1015	SUPERFAMILY	Galactose mutarotase-like	456	1005	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Psa3g2169	1015	CDD	GH38N_AMII_LAM_like	37	313	-	-
	Psa3g2169	1015	Pfam	Alpha mannosidase middle domain	355	446	IPR015341	GO:0004559\|GO:0006013
	Psa3g2169	1015	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	353	447	IPR028995	-
	Psa3g2169	1015	Gene3D	Glycoside hydrolase 38, N terminal domain	37	317	IPR027291	-
	Psa3g2169	1015	Gene3D	-	597	861	-	-
	Psa3g2169	1015	PANTHER	ALPHA-MANNOSIDASE	16	1007	-	-
	Psa3g2169	1015	SMART	Alpha_mann_mid_2	354	428	IPR015341	GO:0004559\|GO:0006013
	Psa3g2169	1015	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	896	1001	IPR041147	-
	Psa3g2169	1015	Pfam	Glycosyl hydrolases family 38 N-terminal domain	38	349	IPR000602	GO:0004559\|GO:0006013
	Psa3g2169	1015	Gene3D	Glycoside hydrolase family 38, central domain	397	451	IPR037094	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g2169	Psa-Chr3	190453743	190460606	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g2169	1	919	Glycoside Hydrolase	AT5G13980	71.905	0.0	1408

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g2169	K01191		-	gmx:100776282	1763.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa3g2169	3	190453743	190460606	Psa3g2169	3	190453743	190460606	ECH