Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02043 ATGGAGAAAAAATTGATCTTTTTGTTGACCCTTTTGGGAATACTCTTCTATGGAGGAGAATCTAAGTTTATAGTGTATAATACCTCACAGGGTATAGTCTCTGAGAAGCTCAATGTTCATCTTGTTGCTCATACTCATGATGATGTTGGATGGTTGAAAACTGTTGATCAGTACTATGTTGGTTCTAACAATTCTATTCAGGGTGCTTGTGTGCAAAATGTGTTGGATTCTATGGTTCATGCTTTATTGGCTGATAAGAACAGGAAATTTATCTATGTCGAGATGGCCTTTTTTCAGCGATGGTGGAATGATCAAAGTGAAGCTATTCAGAATATAGTTAAGCAGCTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGAGCCATGTGTATGCATGATGAGGCAGTAACTCATTACATAGACATGATTGATCAGACTACACTTGGACATCGATTTCTTAAAGAGGAGTTTGGTGTGACTCCCAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTGCAGGCTTACTTACTGGGAGCTGAAGTTGGCTTTGATTCACTTTTCTTTGGTAGGATCGATTACCAGGATAGAAATAAACGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGTTCATCTTCTCAGATCTTTGCTGGCGCATTCCCTGAGAACTATGAACCTCCTTCTGGATTTTACTTTGAAGTTAATGATGATTCACAAATAGTTCAAGATAACATGGATTTGTTTGATTACAATGTGCAAGATAGAGTGAATGATTTCGTTGCTGCTGCATTATCACAAGCAAACATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTACCGGCAGTTGGACAAGCTTATTCATTATGTGAACAAGGATGGACGTGTCAATGCTTTGTACTCTACGCCGTCCATATATACTGATGCAAAATATGCTGCAAATGAGTCATGGCCAATCAAGACTGATGATTTCTTCCCTTATTCAGATCGTGCAAATGGTTTCTGGACAGGCTACTTTACCAGCAGGCCAGCTTTGAAACGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATATTTTAGAGGGCGAAAGAGTTCAGGGCCAAATACAGATTCATTAGCGGATGCTTTAGCAATTGCTCAACACCACGATGCAGTCACTGGCACAGAAAAGCAGCACGTGGCCAATGATTATGCTAAACGATTGGCGATAGGCTACAAGGAGGCAGAGGAACTGGTTTCATCATCACTGGCTTCTTTGGTTGAATCGACATTGCCTACTAGAAGTCAGAACCCAGTTACAAAGTTTCAACAATGTCCGCTTTTGAACATAACATATTGTCCTGCAACAGAAGTTGAACTGGTTCAAGGAAAGAGTTTGGTTATTGTGGTTTATAACTCTCTAGGTTGGAAGAGGAATGAAGTGATTCGAGTTCCTGTTATTGATGGCGATGTTACAGTTCATGACTCTAACGGTGAAGAAATAGAATCTCAAATTCTACCTCTGGCTGAGGTATTTGTAAACTTAAGAAACTACTATGTCAAAGCTTATTTGGGTCAAAATCCATCCAAGACACCCAAGTATTGGCTTGCATTTACAGTTTCTGTACCGCCATTTGGTTTTAGTACCTACACTGTCTCGACTGCCAAAAAAGCAGGTTCCACCAGATCATCAGTATATACACATCAAAGTCATGAAAAGTCTTCTGTTGGTCAAGGAAATTTAAAGCTTACATTTTCTACAGATGAAGAAAAACATACCAATTATGTTAATGCAAGAAATATGGTCGAGGAACAGGTTCAACTGAGTTACCTTTACTATTCAGGATATAATGGAACCGATCAAAAAGATCCACAGAATGCCGGGGCCTATATCTTCCGTCCAAATGGCACATATCATATAAACCATGAAAGACAGGCTCCTGTGACTGTTCTGCATGGACCAATAGTAGATGAAGTGCATCAACAAATTAATCCATGGATATATCAGATTACTAGACAGCACAAAGGAAAGGAACACGTTGAAGTAGAGTTTATTGTTGGTCCTATACCTATTGAAGATGGAGTTGGTAAAGAAGTTGCCACTCGGATTTCAACTACTATTGAAACCGATAAAACTTTTTATACAGATTCGAATGGACGTGATTTTATCAAAAGGGTACGTGACTACAGAACAGACTGGGACCTGGAAGTGCACCAACCCGTTGCTGGAAATTATTACCCAATTAATCTCGGTATATACATAAAGGATAATAAGACAGAATTTTCAGTTTTGGTGGATAGAGCTATTGGAGGATCCAGCTTAGAAGATGGACAAATCGAGTTGATGCTCCACAGGAGATTGCTGCTTGATGATTCAAGAGGTGTTGCAGAGGCCCTAAATGAAACAGACTGTGTTGCTGACAATTGCAAGGGTCTAACTGTTCAAGGTAAATATTATTATAGAATAGATCCTTTGGGTGAGGGAGCTAAATGGCGACGTACTTTTGGCCAGGAAATATATTCTCCACTTTTGTTAGCCTTTTCTGAAAAGGATGATAAAGATGACTGGATGAATACCCGAGTAACAACATTTTCAGGATTTGACTCTTCTTACACATTACCAGAAAACATCGTTATTATAACATTACAGGAACTTGATGATGGGACAGTTCTCCTTCGATTAGCGCATTTATATGAGATTGAAGAAGACAAGGATCTCTCCGTAATTACAAGTGTGGAGTTGAAAAAACTCTTCCCTGGAAAGAAGATCAAAGAAGTGAAAGAGAAGAACATATCTGCAAATCAAGAAAGGACAGAGATGGAGAAGAAAAGACTTGTTTGGAAAGTAGAAGGGTCATCAGGAAATGAAGGTGTTTCAAGAGGAGGTCCAGTTGATCCAAAAGAGCTAACTGTGGAGCTTGCTCCAATGGAAATCCGCACTTTTATCATTTACTTTGATCATAGTAGCCATCTTTTTGATGCATTGTAG 3048 0.3927 MEKKLIFLLTLLGILFYGGESKFIVYNTSQGIVSEKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFQRWWNDQSEAIQNIVKQLVSSGQLEFINGAMCMHDEAVTHYIDMIDQTTLGHRFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRNKRKKEKSLEVIWQGSKSLGSSSQIFAGAFPENYEPPSGFYFEVNDDSQIVQDNMDLFDYNVQDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWYRQLDKLIHYVNKDGRVNALYSTPSIYTDAKYAANESWPIKTDDFFPYSDRANGFWTGYFTSRPALKRYVRLMSGYYLAARQLEYFRGRKSSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYKEAEELVSSSLASLVESTLPTRSQNPVTKFQQCPLLNITYCPATEVELVQGKSLVIVVYNSLGWKRNEVIRVPVIDGDVTVHDSNGEEIESQILPLAEVFVNLRNYYVKAYLGQNPSKTPKYWLAFTVSVPPFGFSTYTVSTAKKAGSTRSSVYTHQSHEKSSVGQGNLKLTFSTDEEKHTNYVNARNMVEEQVQLSYLYYSGYNGTDQKDPQNAGAYIFRPNGTYHINHERQAPVTVLHGPIVDEVHQQINPWIYQITRQHKGKEHVEVEFIVGPIPIEDGVGKEVATRISTTIETDKTFYTDSNGRDFIKRVRDYRTDWDLEVHQPVAGNYYPINLGIYIKDNKTEFSVLVDRAIGGSSLEDGQIELMLHRRLLLDDSRGVAEALNETDCVADNCKGLTVQGKYYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNTRVTTFSGFDSSYTLPENIVIITLQELDDGTVLLRLAHLYEIEEDKDLSVITSVELKKLFPGKKIKEVKEKNISANQERTEMEKKRLVWKVEGSSGNEGVSRGGPVDPKELTVELAPMEIRTFIIYFDHSSHLFDAL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02043 1015 Gene3D Glycoside hydrolase 38, N terminal domain 37 317 IPR027291 -
Trre13g02043 1015 FunFam Alpha-mannosidase 595 861 - -
Trre13g02043 1015 FunFam Alpha-mannosidase 474 597 - -
Trre13g02043 1015 SUPERFAMILY Glycoside hydrolase/deacetylase 26 350 IPR011330 GO:0005975
Trre13g02043 1015 FunFam Alpha-mannosidase 316 396 - -
Trre13g02043 1015 Gene3D - 881 1010 - -
Trre13g02043 1015 PANTHER ALPHA-MANNOSIDASE 18 1007 - -
Trre13g02043 1015 FunFam Alpha-mannosidase 882 1007 - -
Trre13g02043 1015 SUPERFAMILY Galactose mutarotase-like 453 1005 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre13g02043 1015 Gene3D - 474 595 IPR013780 -
Trre13g02043 1015 Gene3D Glycoside hydrolase family 38, central domain 318 396 IPR037094 GO:0004559|GO:0006013
Trre13g02043 1015 Gene3D Glycoside hydrolase family 38, central domain 397 451 IPR037094 GO:0004559|GO:0006013
Trre13g02043 1015 Coils Coil 943 963 - -
Trre13g02043 1015 FunFam Alpha-mannosidase 37 317 - -
Trre13g02043 1015 CDD GH38N_AMII_LAM_like 37 313 - -
Trre13g02043 1015 SMART Alpha_mann_mid_2 354 428 IPR015341 GO:0004559|GO:0006013
Trre13g02043 1015 Pfam Alpha mannosidase middle domain 355 446 IPR015341 GO:0004559|GO:0006013
Trre13g02043 1015 Gene3D - 596 861 - -
Trre13g02043 1015 Pfam Glycosyl hydrolases family 38 N-terminal domain 38 349 IPR000602 GO:0004559|GO:0006013
Trre13g02043 1015 FunFam Alpha-mannosidase 397 451 - -
Trre13g02043 1015 Pfam Glycosyl hydrolases family 38 C-terminal domain 598 813 IPR011682 GO:0004559|GO:0006013
Trre13g02043 1015 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 447 IPR028995 -
Trre13g02043 1015 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 896 1002 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02043 Trre-Chr13 17691718 17700338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02043 1 919 Glycoside Hydrolase AT5G13980 71.798 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02043 K01191 - gmx:100776282 1750.33