Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01570 ATGGGTGAATCCACCATTCCTCATTTTCAGCATCTAATGGCGAAAAAATTGCTCTTTTTGTTGACCCTTTTGGAAATACTGCTCTGTGGGCAATCCAAGTTTATGGTGTACAACACATCACAGGGTATAGTCCCTGACAAGCTCAATGTTCATCTGGTAGCTCATACCCATGACGATGTTGGTTGGTTGAAGACAGTTGATCAGTACTATGTTGGTTCTAACAATTCAATTCAGGGCGCTTGTGTGCAGAATGTGTTGGACTCTATGGTGCACGCGCTGTTGGCTGACAAGAACAGAAAGTTTATCTATGTTGAGATGGCATTTTTCAAGAGATGGTGGAGAGATCAAAGTGAAGCTGTTCAGGATGTTGTTAAGAAACTTGTTAGTTCGGGTCAACTAGAGTTCATAAATGGCGCCATGTCTATGCATGATGAGGCAGTTACACATTACATAGACATGATTGATCAGACTGCACTTGGTCATCAATTTCTGAAAGAGGAATTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCTTTTGGACACTCTGCTGTGCAGGCCTACCTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGACTACCAAGATAGGGCTAACCGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGTAAGAGCCTTGGCTCTTCAGCCCAGATTTTTGCTGGAGCGTTCCCTGAAAATTATGAGCCACCTGCTGGATTTTACTTTGAAGTTAATGATAACTCAGCGATAGTTCAAGATAACATGGAATTGTTTGATTACAATGTCCAAGAACGAGTGAATGACTTTGTTGCAGCTGCATTATCACAAGATGGACGCGTTAATGCTCTTTACTCTACGCCATCCATATATACTGATGCAAAATTTGCTACCAATGAGTACTGGCCAATCAAGACTGATGATTTCTTCCCTTATGCAGATCGTGCAAATGGTTACTGGACAGGATACTTTACCAGTAGACCAGCTATCAAACGCTATGTCAGATTAATGAGTGGCTATTACTTGGCTGCAAGACAACTAGAATTTTTTAGGGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTTGCCAATGATTATTCCAAACGGCTGGCAATAGGCTACAAGGAGGTGCAGTTTCAGAGTCTGTTTCAAGTTACTGTGTATAACCATTTGTTAGTGAATCGTCTAGTGGCATATTGCTTTTTGGCAGGCAGAGGAATTGGTTTCATCATCACTGGCTTGCTTGGTTGA 1344 0.4234 MGESTIPHFQHLMAKKLLFLLTLLEILLCGQSKFMVYNTSQGIVPDKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEMAFFKRWWRDQSEAVQDVVKKLVSSGQLEFINGAMSMHDEAVTHYIDMIDQTALGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRANRKKEKSLEVIWQGSKSLGSSAQIFAGAFPENYEPPAGFYFEVNDNSAIVQDNMELFDYNVQERVNDFVAAALSQDGRVNALYSTPSIYTDAKFATNEYWPIKTDDFFPYADRANGYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFRGRMNSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLAIGYKEVQFQSLFQVTVYNHLLVNRLVAYCFLAGRGIGFIITGLLG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01570 447 SMART Alpha_mann_mid_2 327 401 IPR015341 GO:0004559|GO:0006013
Vian2g01570 447 Gene3D Glycoside hydrolase family 38, central domain 327 426 IPR037094 GO:0004559|GO:0006013
Vian2g01570 447 FunFam Alpha-mannosidase 370 421 - -
Vian2g01570 447 SUPERFAMILY Families 57/38 glycoside transferase middle domain 326 410 IPR028995 -
Vian2g01570 447 PANTHER ALPHA-MANNOSIDASE 18 286 - -
Vian2g01570 447 Pfam Glycosyl hydrolases family 38 N-terminal domain 49 284 IPR000602 GO:0004559|GO:0006013
Vian2g01570 447 FunFam Alpha-mannosidase 289 369 - -
Vian2g01570 447 Pfam Alpha mannosidase middle domain 328 409 IPR015341 GO:0004559|GO:0006013
Vian2g01570 447 SUPERFAMILY Glycoside hydrolase/deacetylase 37 323 IPR011330 GO:0005975
Vian2g01570 447 CDD GH38N_AMII_LAM_like 48 286 - -
Vian2g01570 447 Gene3D Glycoside hydrolase 38, N terminal domain 48 326 IPR027291 -
Vian2g01570 447 FunFam Alpha-mannosidase 48 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01570 Vian-Chr2 32591337 32601920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01570 13 409 Glycoside Hydrolase AT5G13980 70.872 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01570 K01191 - gmx:100776282 720.694