Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2458 ATGGCGAACAAACTACTGATTTTGTTTCTAGGAACAATACTGTTCCTGTGTGTGGAATCAAAGTACATAGCGTATAACACCTCGCAGGGCGTGGTGCCTGGGAAGCTCAACGTTCATCTCGTTGCTCATACACACGACGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCAATTCAGGGGGCTTGTGTGCAAAATGTGTTGGATTCTGTTGTTCAAGCTCTTTTGGCTGATAAGAATCGAAAGTTTATCTACGTTGAGCAAGCCTTTTTCCAGAGATGGTGGAGAGATCAGAGTGAGGCTGCTCAGGATAGTGTAAAGAAACTCGTTAGTTCGGGTCAACTAGAGTTCATAAATGGAGGCATGTGTATGCATGATGAAGCATCAACTCATTACATAGACATGATTGATCAGACTACACTTGGACATCGGTTTATTAAAGAGGAGTTTGGTGTGACTCCTAGAATTGGTTGGCAAATTGATCCCTTTGGACATTCTGCTGTGCAGGCTTACTTATTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTCGGATAGATTACCAAGATAGGGCTAAGCGCAAAAGGGAGAAGAGTCTTGAGGTCATATGGCAGGGTAGTAAGAGCTTTGGCTCATCAGCCCAGATCTTCGCAGGTGCTTTCCCTGAGAATTATGAGCCACCACCTGGTGGATTTTACTTTGAAGTTAATGATGTTTCACCAGTAATTCAAGATAATCTGGATTTGTTTGACTACAATGTTGAAGATCGAGTGAATGACTTTGTTACTGCTGCATTGTCACAGGCAAACATAACTCGAACAAATCATATAATGTGGACGATGGGAACTGATTTTAAGTATCAATATGCACATACATGGTTCCGACAGCTTGACAAGTTTATTCATTATGTCAACAAGGATGGACGTGTCAATGCTTTGTACTCTACACCATCCATATATACGGATGCAAAATATGCTACAAATGAGACGTGGCCAATCAAGACTGATGATTACTTCCCTTATGCAGATAATGCAAATGCTTACTGGACTGGATACTTTACCAGTAGGCCAGCTATCAAGCGCTATGTCAGATTAATGAGTGGCTATTATTTGGCTGCAAGACAACTAGAATTTTTTAGTGGGAGAATGAATTCAGGGCCAAATACAGACTCATTAGCTGATGCTTTGGCAATTGCTCAACATCATGATGCTGTCACTGGCACAGAACAGCAGCATGTGGCAAATGATTATTCGAAACGATTGGCAATAGGCTACAAGGAGGCAGAGCAATTGGTTTCATCAACACTGGCATGCTTGGCTGAGTCAACATTGCCCGCTGGATGTCAGAACCCAGTTACAATGTTTCAACAATGTCCACTTTTGAATATAAGTTATTGTCCTGCATCAGAAGTTGATCTCAGTCATGGAAAGAATTTGGTTATTATTGTTTACAACTCTCTTGCTTGGAGGAGGAACGAAGTGATTCGAATTCCTGTTATTGATGACAATGTTGCGGTTCATGACTCTAATGGCACAGAAATAGAATCTCAACTTCTTCCTCAAGCTGAGGTCTTTGAAGGCTTAAGAAACTTTTATGTCAAGGCATATTTGGGACACACTCCACCCAACACACCCAAATATTGGCTTGCGTTCACAGTTTCAGTACCTCCACTTGGTTTTAGCACATACACTGTCTCAACTGCCAAAAGAACAGGTTCAACCAAATCATCAGTAAATACATATCAAAGTAATGAAAAGGCGAGGTTTGAAGTTGGTCAAGGGAACTTGAAACTTACATTCTCTACAGATGAAGAAACACACAGCAATTATGTTAATATAAGAAGCATGATGGACAAACAAGTTGAACAGAAGTACCTTTACTACTCAGGATATAATGGAAGTCATCAAAAGGATCCACAGAATTCTGGGGCATATATTTTTCGTCCAAATGGCACATATTTCATCAACCATGAAAGACAGGTTCCTTTTACTGTTTTGCATGGACCATTGCTTGATGAAGTGCATCAACAAATCAACCCATGGATATATCAGATTACCAGGCTACACAAAGAAAAGGAGCATGTTGAAGTAGAGTTTATTGTTGGCCCTATACCTATTGAAGATGGAACTGGTAAAGAAGTTGCCACTAAGATTTCAACTGCTTTAAGCAGCAAGAAAACATTTTACACAGATTCTAACGGTCGCGATTTTATCAAAAGGATACGTGACTTCAGAACAGACTGGGATCTGGAAGTGAACCAGCCCATTGCAGGAAATTATTACCCTACAGAATTCTCAGTTTTGGTGGATAGATCTGTTGGAGGATCTAGCCTAGAAGATGGACAAATAGAACTGATGGTCCACAGGCGATTGCTACTTGATGATTCAAAAGGTGTTGCAGAGGCTCTAAATGAAACAGACTGTGTCGCTGATGATTGCAGGGGCCTAACTGTCCAAGGTAAATTTTACTACAGGATAGATCCCTTGGGTGAGGGTGCAAAGTGGCGCCGAACTTTTGGTCAGGAGATATATTCTCCTCTTCTATTAGCTTTCTCTGAAAAGGATGATAAAGATGATTGGATGAATTCCCATGTGCCAACATTTTCAGGAATGGATTCGTCATATACATTGCCTGATAACATTGCAATGATAACATTACAGGAACTTGATGATGGGGCAGTTCTGCTTCGGTTAGCACATCTATATGAGATTGGAGAAGATAAGGATCTCTCTGTAAAGACAAGTGTAGAGCTGAAAAGACTCTTCCCTGAAAAGAAGATCAAAGGGGTGAAAGAGATGAGCTTGTCAGCCAATCAAGAAAGGACAGAAATGGAGAAGAAAAGATTTGCATGGAAAGTAAAAGGGTCTTTAGGAGATGAACATGTTTTATCAAGGGGAGGGCCAGTTGATCAAAAAGAGCTAGCTGTGGAGCTTGCTCCCATGGAGATCCGCACTTTTATCATTTACTTTGATGACAATGACATGCCTAACCTTCTCTCAGATGCATAG 3030 0.4092 MANKLLILFLGTILFLCVESKYIAYNTSQGVVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVVQALLADKNRKFIYVEQAFFQRWWRDQSEAAQDSVKKLVSSGQLEFINGGMCMHDEASTHYIDMIDQTTLGHRFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKREKSLEVIWQGSKSFGSSAQIFAGAFPENYEPPPGGFYFEVNDVSPVIQDNLDLFDYNVEDRVNDFVTAALSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKFIHYVNKDGRVNALYSTPSIYTDAKYATNETWPIKTDDYFPYADNANAYWTGYFTSRPAIKRYVRLMSGYYLAARQLEFFSGRMNSGPNTDSLADALAIAQHHDAVTGTEQQHVANDYSKRLAIGYKEAEQLVSSTLACLAESTLPAGCQNPVTMFQQCPLLNISYCPASEVDLSHGKNLVIIVYNSLAWRRNEVIRIPVIDDNVAVHDSNGTEIESQLLPQAEVFEGLRNFYVKAYLGHTPPNTPKYWLAFTVSVPPLGFSTYTVSTAKRTGSTKSSVNTYQSNEKARFEVGQGNLKLTFSTDEETHSNYVNIRSMMDKQVEQKYLYYSGYNGSHQKDPQNSGAYIFRPNGTYFINHERQVPFTVLHGPLLDEVHQQINPWIYQITRLHKEKEHVEVEFIVGPIPIEDGTGKEVATKISTALSSKKTFYTDSNGRDFIKRIRDFRTDWDLEVNQPIAGNYYPTEFSVLVDRSVGGSSLEDGQIELMVHRRLLLDDSKGVAEALNETDCVADDCRGLTVQGKFYYRIDPLGEGAKWRRTFGQEIYSPLLLAFSEKDDKDDWMNSHVPTFSGMDSSYTLPDNIAMITLQELDDGAVLLRLAHLYEIGEDKDLSVKTSVELKRLFPEKKIKGVKEMSLSANQERTEMEKKRFAWKVKGSLGDEHVLSRGGPVDQKELAVELAPMEIRTFIIYFDDNDMPNLLSDA* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2458 1009 SUPERFAMILY Galactose mutarotase-like 457 997 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo06g2458 1009 CDD GH38N_AMII_LAM_like 36 313 - -
Amo06g2458 1009 Pfam Glycosyl hydrolases family 38 C-terminal domain 601 803 IPR011682 GO:0004559|GO:0006013
Amo06g2458 1009 SUPERFAMILY Families 57/38 glycoside transferase middle domain 353 446 IPR028995 -
Amo06g2458 1009 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 887 994 IPR041147 -
Amo06g2458 1009 Gene3D - 599 852 - -
Amo06g2458 1009 SMART Alpha_mann_mid_2 354 428 IPR015341 GO:0004559|GO:0006013
Amo06g2458 1009 Pfam Alpha mannosidase middle domain 354 446 IPR015341 GO:0004559|GO:0006013
Amo06g2458 1009 PANTHER ALPHA-MANNOSIDASE 13 999 - -
Amo06g2458 1009 Gene3D - 873 1001 - -
Amo06g2458 1009 Gene3D Glycoside hydrolase family 38, central domain 318 396 IPR037094 GO:0004559|GO:0006013
Amo06g2458 1009 PANTHER ALPHA-MANNOSIDASE 13 999 - -
Amo06g2458 1009 Gene3D Glycoside hydrolase family 38, central domain 397 451 IPR037094 GO:0004559|GO:0006013
Amo06g2458 1009 Gene3D - 474 598 IPR013780 -
Amo06g2458 1009 Gene3D Glycoside hydrolase 38, N terminal domain 36 317 IPR027291 -
Amo06g2458 1009 SUPERFAMILY Glycoside hydrolase/deacetylase 25 350 IPR011330 GO:0005975
Amo06g2458 1009 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 349 IPR000602 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2458 Amo-Chr6 86808008 86827462 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2458 6 910 Glycoside Hydrolase AT5G13980 71.073 0.0 1377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2458 K01191 - gmx:100776282 1701.41