Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1845 ATGTGTATGCATGATGAGGCCACGCCACATTACGTTGATCTAATTGACCAGACCACTCTCGGGCATCAATTTATCAAAGAGGAATTTGGTAAGGTTCCAAGAGTTGGTTGGCAGATTGACCCATTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGCGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAAGACTCTAGAGTTTATTTGGCAGGGTTCCAGGTCTCTTGGTTCTTCTTCACAAATATTCACTGGGATATTTCCCAGACATTATGATCCTCCTGATGGTTTCACGTTTGAGATAAATGATGTTTCCCCTCCTATTCAAGATGACATTCTACTGTTTGACTATAATGTTCAAGAAAGAGTCAACGATTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAAAACAAATCACATTATGTGGACAATGGGGACAGACTTCCGTTATCAATATGCTAATTCATGGTTCAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGACGTGTCAATGCATTATATTCAACACCAGTTATCTACACTGATGCAAAATATGCAGCTAATGAGTATTGGCCTCTTAAAGTTGATGATTTCTTCCCGTATGCAGATCATCCAAATGCGTATTGGACTGGATATTTTACAAGTAGGCCAGCTTTGAAGGGCTATGTGAGAGTGATGAGTGGTTACTATTTGGCAGCAAGGCAATTGGAATATTTTAAAGGGAGGAATGAAACAGGACCAAATACTGATGCATTAGCTGATGCTTTAGCAATTGCTCAGCACCATGATGCAGTTAGTGGCACAGAAAGGCAGCATGTTGCTTCTGATTATGCACTGCGACTCTCAATAGGATATGCAGAgGCAGAAAGGTTGGTTGCGTCTGCACTTGCTTCCTTGGTAAACCAAAGATTAAGTTTGCATAGGGTGAACCCAGTGACAGACTTCCAGCAGTGTCCTCTTCTTAATATAAGTTACTGTCCTCCATCTGAAGCTACATTGGTCAACGGAAAAAGCTTGGTGATTGTTGTTTATAATCCTCTTGCTTGGAAGAGGGAAGATGTAATTCGAATTCCTGTTTCCACTGGACAGGTTTCTGTCCAGGATTTTGCTGGGAAGAAAATTGAGTCTCAGCTTCTGCCTCTGTCTAATGCTACTTTGACTACGAGAAAACATTATGTCAGAGCATATATAGGAAAAGCTCCTGGTGGTGATGAACTCAAGTATTGGCTTGCATTTCCAGTGTCTGTACCTCCCCTTGGTTTCAGCACCTATATAGTGTCAAGCTCTAAACTGTCAAGTCATAGTTCAACTATCTCAAAGATGTACAGATCAGAAGGAAGTACAAATAAAAGCATAGAAGTTGGACAAGGGAATCTAATGCTACTTTATTCAGCAGATGAAGGAAAACTGACTCACTATGTTAACAGTAGAACTCTGGTTACAGCATCAGTTGAACAATCATACAGTTATTATTCTGGAAATGATGGGACTGATAAAGATCCTCAGGCTTCTGGGGCATATGTCTTCCGTCCAAATGGCTCATTTCCCATTAAATCAGATCACCAGGTACCTTTTACTGTCCTGCGTGGTCCAATATTGGACGAAGTACATCAACAGCTCAATCCATGGATATCCCAGATTACGAGGATATTCAAGGCAAAAGAGCATGCTGAAATTGAGTTCACAgTTGGGCCTATACCTGTGGACGATGGCATTGGGAAAGAAATTATTACTCAATTTAAAACTACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGACGTGACTTCATTAAAAGGATTCAAGATTTCAGGACAGACTGGGATCTACAAGTGAACCAACCCATAGCTGGAAACTATTACCCAGTTAATTTAGGAATATATGTGCAAGATAGTAATATGGAATTCTCAGTGTTGGTGGACCGCTCAGTTGGAGGTTCCAGCTTGGAAGATGGCCAAATGGAGCTGATGCTCCACAGgaGGTTGCTTCATGATGATGCGAGAGGTGTAGGTGAGGTACTCAATGAAACAGTTTGCATAGCTGATAAGTGTGAGGGCTTAACGATTCAAGGAAAACTGTACCTTAGAATTGACCATATAGGCGAAGGTGCTAAGTGGCGTCGGACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAACAGGATGGGGATAATTGGTTGCATTTTGGTTCATCAACATTTTCTGGCATAGATTCTTCGTACAGTTTACCCAACAACAGTGCTCTTTTAACCCTCCAGgaatttaaaaatggaaaagtacTCCTAAGATTGGCTCACCTTTATgagattggaGAGGACAAAGATTACTCAGTAACGGCAAGTGTGGAGTTGAAAAAGTTGTTTGCTAACAAGAAGATAAATAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAGGAAGTTAGATTGGAAGGTAGAAGGCTCCACTGAAGAACATAAGGTGGTGAGGGGAGGACCCGTTGATCCGACAAAGTTGGTGGTTGAACTTGCTCCAATGGAGATTCGGACATTCTTTATTGACTTTAATCCCCTCCAAACAGTTCCTGAAGCAGAAAATCATGTGGCAATGTAA 2688 0.4085 MCMHDEATPHYVDLIDQTTLGHQFIKEEFGKVPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKTLEFIWQGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTKTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPVIYTDAKYAANEYWPLKVDDFFPYADHPNAYWTGYFTSRPALKGYVRVMSGYYLAARQLEYFKGRNETGPNTDALADALAIAQHHDAVSGTERQHVASDYALRLSIGYAEAERLVASALASLVNQRLSLHRVNPVTDFQQCPLLNISYCPPSEATLVNGKSLVIVVYNPLAWKREDVIRIPVSTGQVSVQDFAGKKIESQLLPLSNATLTTRKHYVRAYIGKAPGGDELKYWLAFPVSVPPLGFSTYIVSSSKLSSHSSTISKMYRSEGSTNKSIEVGQGNLMLLYSADEGKLTHYVNSRTLVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFPIKSDHQVPFTVLRGPILDEVHQQLNPWISQITRIFKAKEHAEIEFTVGPIPVDDGIGKEIITQFKTTMKTNKTFYTDSNGRDFIKRIQDFRTDWDLQVNQPIAGNYYPVNLGIYVQDSNMEFSVLVDRSVGGSSLEDGQMELMLHRRLLHDDARGVGEVLNETVCIADKCEGLTIQGKLYLRIDHIGEGAKWRRTVGQELYSPLLLAFTEQDGDNWLHFGSSTFSGIDSSYSLPNNSALLTLQEFKNGKVLLRLAHLYEIGEDKDYSVTASVELKKLFANKKINKVTEMSLSANQERAEMEKRKLDWKVEGSTEEHKVVRGGPVDPTKLVVELAPMEIRTFFIDFNPLQTVPEAENHVAM 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1845 895 Gene3D - 473 737 - -
Ssu4g1845 895 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 773 877 IPR041147 -
Ssu4g1845 895 Pfam Glycosyl hydrolases family 38 C-terminal domain 475 689 IPR011682 GO:0004559|GO:0006013
Ssu4g1845 895 Gene3D Glycoside hydrolase family 38, central domain 269 324 IPR037094 GO:0004559|GO:0006013
Ssu4g1845 895 Gene3D - 346 472 IPR013780 -
Ssu4g1845 895 SMART Alpha_mann_mid_2 226 300 IPR015341 GO:0004559|GO:0006013
Ssu4g1845 895 SUPERFAMILY Families 57/38 glycoside transferase middle domain 225 320 IPR028995 -
Ssu4g1845 895 Gene3D Glycoside hydrolase family 38, central domain 190 268 IPR037094 GO:0004559|GO:0006013
Ssu4g1845 895 Pfam Glycosyl hydrolases family 38 N-terminal domain 1 221 IPR000602 GO:0004559|GO:0006013
Ssu4g1845 895 Pfam Alpha mannosidase middle domain 226 318 IPR015341 GO:0004559|GO:0006013
Ssu4g1845 895 Gene3D - 756 882 - -
Ssu4g1845 895 Gene3D Glycoside hydrolase 38, N terminal domain 1 189 IPR027291 -
Ssu4g1845 895 PANTHER ALPHA-MANNOSIDASE 1 884 - -
Ssu4g1845 895 PANTHER ALPHA-MANNOSIDASE 1 884 - -
Ssu4g1845 895 SUPERFAMILY Glycoside hydrolase/deacetylase 2 224 IPR011330 GO:0005975
Ssu4g1845 895 SUPERFAMILY Galactose mutarotase-like 326 880 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1845 Ssu-Chr4 33754546 33767277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1845 1 820 Glycoside Hydrolase AT3G26720 72.561 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1845 K01191 - gmx:100795651 1693.32