Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0143 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01485 Bva05g00265 . . . . . . . . . . . . . . Gma05g00438 . . . . . . Lal7g0884 . . . . . . . . . . . . . . . . . . . . . . Lja1g5243 Lja4g2390 . . . . . . . . . Mtr3g2366 . . . . . . Psa4g1522 . . . . . . . . . . . . . . . . . . . . . . Tpr7g1186 . . . Tsu03g02167 . . . . . . . . . . . .
Vvi17g0144 . . . . . . Aed10g0819 . Aev08g2381 . Ahy18g2973 . Aip08g03377 . . . . . Apr1g0278 . . . . . . . Bva06g01483 . . Car05g01637 Cca03g00345 . . . Dod09g0161 . . . . . Gma06g01528 Gma04g01883 . . Gso6g1449 Gso6g1449 . . . . . Lal17g0857 . . . . . . . . . . . . . . . . . . . . Lja1g5244 . . Mal2g2494 . . . . . . . Mtr3g2367 . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2351 . . . . Tpr7g1188 . . . Tsu03g02168 . . . . . . . . . . . .
Vvi17g0145 Acco04g2431 . Accr8g00328 . Adu01g01671 . . Aed6g1357 Aev01g1909 . Ahy11g1556 . Aip01g01689 . Alju06g2393 . Amo11g1657 . Apr6g0993 . Arst1g02187 . Bach5g00223 . Bisa08g2124 . Bva06g01481 Bva05g00266 Car07g01139 . . Cca11g01736 Dere03g0623 . Dod05g1509 . Enph6g0504 . Glsi02g0572 . . . Gma05g00436 Gma17g01192 . . . . Lal19g1031 Lal7g0885 Lal14g1469 . . . Lan1g1465 Lan1g1465 Lan1g1465 . . . . . Lasa4g02995 . . Lele22g1672 Lele23g0317 Lele24g1636 . . . . . Lja4g2389 Mal5g3996 . Mepo1g01481 . . . Mibi09g0387 . Mtr4g3713 . . . Phco8g00635 . Prci4g2721 . . . Pste6g01847 . . . . . Pumo4g01526 . Pvu3g2161 . Rops2g04112 . Seca12g01726 . Spst3g04448 . . Ssu6g1483 Sto4g0104 . Tpr5g2759 . Trre15g03037 . Tsu04g02505 . . . Vifa4g03125 . . . . . Vivi1g02270 . . .
Vvi17g0146 Acco04g2432 . Accr8g00327 . Adu01g01669 . . Aed6g1358 Aev01g1910 . Ahy11g1555 . Aip01g01688 . Alju06g2394 . Amo11g1656 . Apr1g0277 . Arst1g02185 . Bach5g00224 . Bisa08g2122 . . Bva05g00267 Car07g01137 . . Cca11g01737 Dere03g0624 . Dod05g1510 . Enph6g0505 . Glsi02g0573 . . . . . . . . . Lal19g1032 Lal7g0887 . Lal17g0858 Lal4g0734 . Lan1g1463 Lan1g1463 . Lan1g1463 Lan1g1463 . Lapu3g01215 . Lasa4g02996 . Lele21g1692 Lele22g1673 . Lele24g1637 . . . . Lja1g5245 Lja4g2387 Mal5g3997 . Mepo1g01480 . . . Mibi09g0386 . Mtr4g3714 . . . Phco8g00634 . Prci4g2722 . . . Pste6g01849 . . . . . Pumo4g01525 . Pvu3g2160 . Rops2g04111 . Seca4g02870 . Spst3g04449 . . Ssu6g1482 . . Tpr5g2760 . . . Tsu04g02506 . Vian1g01287 . Vifa4g03127 . Vimu7g00543 . Viun3g04309 . Vivi1g02269 . . Vra7g1499
Vvi17g0147 . . . . . . . . Aev01g1912 . Ahy11g1553 . Aip01g01681 . . . Amo11g1647 . Apr1g0274 . . . . . . . Bva06g01478 . . . . . . . Dod05g1513 . . . . . . Gma04g01880 . . . . . . . Lal7g0888 . . . Lal21g0771 . . . . . . . . . . . . . . . . . . Lja1g5248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0093 . . . . . . . . . . . . . . . . . . .
Vvi17g0148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g02657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4301 . . Mal2g1316 . . . . . . . Mtr3g3520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g3340 . . . Tsu07g01108 . . . . . . . . . . . .
Vvi17g0149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0152 . . . . . . Aed10g0820 . Aev08g2379 . Ahy18g2976 . Aip08g03380 . . . . . . . . . . . . . . Bva05g00268 . Car05g01638 Cca03g00352 . . . Dod09g0163 . . . . . Gma06g01529 . . . Gso6g1450 . . . . . . Lal17g0859 . . . . . . . . . . . . . . . . . . . . . . . Mal2g2492 . Mepo3g05752 . . . . . Mtr3g2368 . . . Phco7g01987 . . . . . Pste2g00415 . . . . . Pumo10g01900 . Pvu9g1732 . Rops10g00783 . Seca4g02871 . . Ssu1g2349 . . . . . . . . Tsu03g02512 . . . Vifa2g01907 . . . Viun9g01448 . Vivi3g04571 . .
   
Previous Page 2360 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Tpr Tpr5g2760 Chr5 49719215 49723581 +
Vvi Vvi17g0143 Chr17 1246766 1249232 -
Bva Bva06g01485 Chr06 10765051 10769896 -
Bva Bva05g00265 Chr05 1301345 1305454 +
Gma Gma05g00438 Chr05 4178818 4182606 +
Lal Lal7g0884 Chr7 15365783 15369703 -
Lja Lja1g5243 Chr1 78720081 78724360 +
Lja Lja4g2390 Chr4 26782537 26787040 +
Mtr Mtr3g2366 Chr3 37487894 37488945 +
Psa Psa4g1522 Chr4 106150629 106153559 -
Tpr Tpr7g1186 Chr7 11918397 11927151 +
Tsu Tsu03g02167 Chr03 23204643 23208037 +
Vvi Vvi17g0144 Chr17 1252543 1259365 -
Aed Aed10g0819 Chr10 6804456 6808835 -
Aev Aev08g2381 Chr08 22881844 22884745 +
Ahy Ahy18g2973 Chr18 134821055 134829422 -
Aip Aip08g03377 Chr08 125015366 125022101 -
Apr Apr1g0278 Chr1 3251633 3256659 +
Bva Bva06g01483 Chr06 10757983 10762028 +
Car Car05g01637 Chr05 61123608 61128509 -
Cca Cca03g00345 Chr03 5335411 5340691 -
Dod Dod09g0161 Chr09 2234407 2239665 -
Gma Gma06g01528 Chr06 14719542 14725195 -
Gma Gma04g01883 Chr04 49073103 49077315 +
Gso Gso6g1449 Chr6 14431533 14437259 -
Gso Gso6g1449 Chr6 14431533 14437259 -
Lal Lal17g0857 Chr17 6492189 6496495 -
Lja Lja1g5244 Chr1 78726034 78732361 -
Mal Mal2g2494 Chr2 31624244 31627818 +
Mtr Mtr3g2367 Chr3 37488795 37504677 -
Ssu Ssu1g2351 Chr1 65891059 65895211 +
Tpr Tpr7g1188 Chr7 11927218 11937212 -
Tsu Tsu03g02168 Chr03 23208548 23212833 -
Vvi Vvi17g0145 Chr17 1274905 1279148 +
Acco Acco04g2431 Chr04 41049590 41053016 +
Accr Accr8g00328 Chr8 4706104 4709522 -
Adu Adu01g01671 Chr01 55276137 55279154 -
Aed Aed6g1357 Chr6 18239763 18243010 +
Aev Aev01g1909 Chr01 24074471 24076945 +
Ahy Ahy11g1556 Chr11 72732042 72735105 -
Aip Aip01g01689 Chr01 67761679 67764692 -
Alju Alju06g2393 Chr06 50697180 50701575 +
Amo Amo11g1657 Chr11 72138064 72141059 -
Apr Apr6g0993 Chr6 14533742 14537488 -
Arst Arst1g02187 Chr1 55956557 55959620 -
Bach Bach5g00223 Chr5 1572485 1575772 +
Bisa Bisa08g2124 Chr08 50566022 50571289 -
Bva Bva06g01481 Chr06 10751656 10754915 -
Bva Bva05g00266 Chr05 1306940 1310087 +
Car Car07g01139 Chr07 10164121 10167376 -
Cca Cca11g01736 Chr11 41941629 41944976 +
Dere Dere03g0623 Chr03 10357017 10360421 +
Dod Dod05g1509 Chr05 40010023 40013156 +
Enph Enph6g0504 Chr6 8446166 8449862 +
Glsi Glsi02g0572 Chr02 3691952 3698951 +
Gma Gma05g00436 Chr05 4154670 4158035 -
Gma Gma17g01192 Chr17 10464388 10467801 -
Lal Lal19g1031 Chr19 14134433 14137890 +
Lal Lal7g0885 Chr7 15372756 15375849 +
Lal Lal14g1469 Chr14 15748200 15751210 +
Lan Lan1g1465 Chr1 24669816 24672964 -
Lan Lan1g1465 Chr1 24669816 24672964 -
Lan Lan1g1465 Chr1 24669816 24672964 -
Lasa Lasa4g02995 Chr4 554489264 554492284 +
Lele Lele22g1672 Chr22 22213126 22216709 +
Lele Lele23g0317 Chr23 2217236 2224923 -
Lele Lele24g1636 Chr24 21923909 21927257 +
Lja Lja4g2389 Chr4 26764921 26767748 +
Mal Mal5g3996 Chr5 109641858 109645130 +
Mepo Mepo1g01481 Chr1 14611050 14614652 -
Mibi Mibi09g0387 Chr09 4950909 4954158 -
Mtr Mtr4g3713 Chr4 50886029 50889685 +
Phco Phco8g00635 Chr8 6345938 6349215 -
Prci Prci4g2721 Chr4 39355846 39359531 +
Pste Pste6g01847 Chr6 8481802 8489216 +
Pumo Pumo4g01526 Chr4 19173555 19176840 -
Pvu Pvu3g2161 Chr3 42410908 42414511 -
Rops Rops2g04112 Chr2 74806592 74809669 -
Seca Seca12g01726 Chr12 18979249 18982346 -
Spst Spst3g04448 Chr3 96010496 96013813 +
Ssu Ssu6g1483 Chr6 24351336 24354394 -
Sto Sto4g0104 Chr4 857495 860643 -
Tpr Tpr5g2759 Chr5 49713054 49716283 +
Trre Trre15g03037 Chr15 27418371 27421017 -
Tsu Tsu04g02505 Chr04 28313363 28316221 +
Vifa Vifa4g03125 Chr4 991680925 991683719 +
Vivi Vivi1g02270 Chr1 47942947 47945963 -
Vvi Vvi17g0146 Chr17 1281027 1285167 +
Acco Acco04g2432 Chr04 41053084 41058217 +
Accr Accr8g00327 Chr8 4699905 4703612 -
Adu Adu01g01669 Chr01 55199256 55203540 -
Aed Aed6g1358 Chr6 18244778 18248803 +
Aev Aev01g1910 Chr01 24079897 24082908 +
Ahy Ahy11g1555 Chr11 72643380 72647686 -
Aip Aip01g01688 Chr01 67669082 67673510 -
Alju Alju06g2394 Chr06 50701694 50707503 +
Amo Amo11g1656 Chr11 72061873 72066323 -
Apr Apr1g0277 Chr1 3222810 3226190 -
Arst Arst1g02185 Chr1 55879737 55883959 -
Bach Bach5g00224 Chr5 1577175 1580756 +
Bisa Bisa08g2122 Chr08 50556678 50560226 -
Bva Bva05g00267 Chr05 1311487 1314709 +
Car Car07g01137 Chr07 10152349 10157142 -
Cca Cca11g01737 Chr11 41948600 41952428 +
Dere Dere03g0624 Chr03 10364459 10367794 +
Dod Dod05g1510 Chr05 40019410 40023318 +
Enph Enph6g0505 Chr6 8453964 8458715 +
Glsi Glsi02g0573 Chr02 3699036 3702964 +
Lal Lal19g1032 Chr19 14149658 14153604 +
Lal Lal7g0887 Chr7 15376515 15377334 +
Lal Lal17g0858 Chr17 6519520 6523108 +
Lal Lal4g0734 Chr4 6108717 6113021 +
Lan Lan1g1463 Chr1 24641723 24645160 -
Lan Lan1g1463 Chr1 24641723 24645160 -
Lan Lan1g1463 Chr1 24641723 24645160 -
Lan Lan1g1463 Chr1 24641723 24645160 -
Lapu Lapu3g01215 Chr3 13073204 13077285 -
Lasa Lasa4g02996 Chr4 554503766 554507103 +
Lele Lele21g1692 Chr21 24858599 24866336 +
Lele Lele22g1673 Chr22 22218127 22220945 +
Lele Lele24g1637 Chr24 21928675 21931467 +
Lja Lja1g5245 Chr1 78823046 78827293 +
Lja Lja4g2387 Chr4 26737761 26743091 -
Mal Mal5g3997 Chr5 109658123 109663315 +
Mepo Mepo1g01480 Chr1 14602687 14607768 -
Mibi Mibi09g0386 Chr09 4945370 4950828 -
Mtr Mtr4g3714 Chr4 50893626 50898397 +
Phco Phco8g00634 Chr8 6333562 6343373 -
Prci Prci4g2722 Chr4 39362415 39366159 +
Pste Pste6g01849 Chr6 8500872 8505465 +
Pumo Pumo4g01525 Chr4 19153252 19157258 -
Pvu Pvu3g2160 Chr3 42400169 42403848 -
Rops Rops2g04111 Chr2 74800228 74805045 -
Seca Seca4g02870 Chr4 49613023 49616266 +
Spst Spst3g04449 Chr3 96017473 96021150 +
Ssu Ssu6g1482 Chr6 24343950 24347848 -
Tpr Tpr5g2760 Chr5 49719215 49723581 +
Tsu Tsu04g02506 Chr04 28320935 28324413 +
Vian Vian1g01287 Chr1 13888827 13892145 -
Vifa Vifa4g03127 Chr4 992005673 992010617 +
Vimu Vimu7g00543 Chr7 5565529 5568864 +
Viun Viun3g04309 Chr3 50881097 50884770 +
Vivi Vivi1g02269 Chr1 47924776 47928219 -
Vra Vra7g1499 Chr7 32304398 32308125 +
Vvi Vvi17g0147 Chr17 1287518 1304037 -
Aev Aev01g1912 Chr01 24089764 24093362 +
Ahy Ahy11g1553 Chr11 72033551 72039614 -
Aip Aip01g01681 Chr01 67141819 67148033 -
Amo Amo11g1647 Chr11 71337338 71343005 -
Apr Apr1g0274 Chr1 3191060 3196000 -
Bva Bva06g01478 Chr06 10743120 10747122 -
Dod Dod05g1513 Chr05 40041681 40045604 +
Gma Gma04g01880 Chr04 49036721 49046654 -
Lal Lal7g0888 Chr7 15383785 15389341 +
Lal Lal21g0771 Chr21 6490989 6497904 -
Lja Lja1g5248 Chr1 78941097 78945958 +
Sto Sto4g0093 Chr4 751180 755607 -
Vvi Vvi17g0148 Chr17 1305277 1307598 +
Car Car05g02657 Chr05 71545448 71550581 -
Lja Lja1g4301 Chr1 55486862 55492205 +
Mal Mal2g1316 Chr2 15827003 15830938 +
Mtr Mtr3g3520 Chr3 49047524 49051642 -
Tpr Tpr3g3340 Chr3 36807183 36811906 -
Tsu Tsu07g01108 Chr07 9450360 9453916 +
Vvi Vvi17g0149 Chr17 1307825 1308955 -
Vvi Vvi17g0150 Chr17 1309797 1312896 -
Vvi Vvi17g0151 Chr17 1321217 1322939 +
Vvi Vvi17g0152 Chr17 1326721 1332151 +
Aed Aed10g0820 Chr10 6841308 6846376 +
Aev Aev08g2379 Chr08 22860655 22865881 -
Ahy Ahy18g2976 Chr18 134847171 134854011 +
Aip Aip08g03380 Chr08 125039769 125045169 +
Bva Bva05g00268 Chr05 1315563 1319137 +
Car Car05g01638 Chr05 61137136 61141676 +
Cca Cca03g00352 Chr03 5418696 5422971 +
Dod Dod09g0163 Chr09 2260584 2270187 +
Gma Gma06g01529 Chr06 14747230 14751782 +
Gso Gso6g1450 Chr6 14458239 14462858 +
Lal Lal17g0859 Chr17 6529096 6533598 +
Mal Mal2g2492 Chr2 31603311 31608471 -
Mepo Mepo3g05752 Chr3 71667958 71672732 +
Mtr Mtr3g2368 Chr3 37505246 37512656 +
Phco Phco7g01987 Chr7 33853063 33857496 +
Pste Pste2g00415 Chr2 3610287 3615139 +
Pumo Pumo10g01900 Chr10 25075452 25080157 +
Pvu Pvu9g1732 Chr9 24482285 24486344 +
Rops Rops10g00783 Chr10 18288522 18292159 -
Seca Seca4g02871 Chr4 49628992 49630908 +
Ssu Ssu1g2349 Chr1 65843473 65848872 -
Tsu Tsu03g02512 Chr03 29815761 29820664 +
Vifa Vifa2g01907 Chr2 495133144 495136564 +
Viun Viun9g01448 Chr9 16973845 16978766 -
Vivi Vivi3g04571 Chr3 82871809 82875155 +
Lja Lja1g4301 Chr1 55486862 55492205 +