Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1031 ATGGCGTTGTTCCTGCTATACGAATCTGCTTCTGGTTATGCTCTGTTTGAGGCTCACGGCCTTGACGAAATAGGGCAAAACACCGAAGCCGTTCGCAACTCTGTTTCTGATTTGAATCGGTTCGGTAAGGTTGTTAAGCTCCGCTCTTTCAATCCTTTTACTTCTGCTCTTGATGCTCTCACACAGTGCAATGCAATCTCTGAAGGTCTGTTAACTGATGAGCTTAGGACAGTTTTGGAGACTAATTTGCCTAAAGTGAAAGAAGGTAAAAAGTCTAAGTTTAGTTTAGGTGTAGTCGATCCTAAGATCGGTAACCAGATATCCGAGCTCACCAAAATCCCTTGCCAAAGTAATGAGTTTGTACTAGAGCTTATTCGTGGTGTGCGCCTCCATTTTGATAGTTTTGTTGGTGACCTCAAGTCTGGAGATTTGGAAAAAGCTCAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTCAAATTTAATGTGAACCGAGTCGACAATATGGTTATTCAAGCAATCTTCCTCCTTGATACACTTGATAAAGATATCAATTCGTTCTCCATGAGAGTCAGAGAATGGTATTCATGGCATTTTCCTGAGCTGGTGAAGATTGTAAATGATAATTATCTGTATGCCAAACTTACAAAATTTATTGAGGACAAGTCAAAGTTGACTGGAGACAGTATTTCAGACTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGATGCTGCCAAATCCTCCATGGGACAGGATTTATCACCGGTGGACTTGATTAATGTCCAGCAATTTGCACAGCGAGTTATGGACCTATCTGAGTATAGACGGAAGCTGTATGATTACCTGGTTACTAAAATGAGTGACATTGCACCTAATTTGGCCTCCTTAATTGGTGAAGTTGTTGGTGCTCGTTTAATTTCTCATGCTGGTAGCCTCACAAATTTAGCCAAATGCCCCTCCTCGACTCTTCAAATCCTTGGCGCAGAGAAGGCTTTGTTTAGGGCATTAAAAACTAAAGGAAACACTCCCAAATATGGTCTCATATTCCACTCTTCTTTCATTGGGCGAGCATCTGCCAAAAATAAGGGTCGTATGGCTCGCTATCTTGCTAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAGGGAAACAGGCACTGCTGCTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGATAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGAGGTCTGCTATTGAAAGTGCTGATAACAAAGATACAGAGAAGGAAACAGAAGAAGTTCCTCTTGAAGCTTCAAGCAAGAAAACCAAAAAGAAGCAAAAGGGTGGTGATGACATAGTTGTTGATAAGCCTGCAGAAAATACAAATGGTGATGCAGGTGAGGATCATAAATCAGAGAAGAAGAAGAAAAAGAAAGAGAAGAGGAAACTGGATCAGGAGACAGAGCTTGATGATCAAGGTGTAGATGATGATGTCAAGAAGAAGAAAAAGAAGGATAAAAAGGTTGATAATGCAGAAGTACTGGAGGCTGCTATTGAGACTAAGAAGAAGAAAAAGAAGTAA 1617 0.4125 MALFLLYESASGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALTQCNAISEGLLTDELRTVLETNLPKVKEGKKSKFSLGVVDPKIGNQISELTKIPCQSNEFVLELIRGVRLHFDSFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKLTKFIEDKSKLTGDSISDLTDIVGDEDKAKEIVDAAKSSMGQDLSPVDLINVQQFAQRVMDLSEYRRKLYDYLVTKMSDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERETGTAAFGEKLREQVEERLDFYDKGVAPRKNIDVMRSAIESADNKDTEKETEEVPLEASSKKTKKKQKGGDDIVVDKPAENTNGDAGEDHKSEKKKKKKEKRKLDQETELDDQGVDDDVKKKKKKDKKVDNAEVLEAAIETKKKKKK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1031 538 MobiDBLite consensus disorder prediction 473 523 - -
Lal19g1031 538 Gene3D Nop domain 299 425 IPR042239 -
Lal19g1031 538 MobiDBLite consensus disorder prediction 432 523 - -
Lal19g1031 538 Pfam snoRNA binding domain, fibrillarin 177 411 IPR002687 -
Lal19g1031 538 SMART NOSIC_2 170 222 IPR012976 -
Lal19g1031 538 Coils Coil 478 501 - -
Lal19g1031 538 Gene3D - 140 298 - -
Lal19g1031 538 SUPERFAMILY Nop domain 163 414 IPR036070 -
Lal19g1031 538 ProSiteProfiles Nop domain profile. 295 415 IPR002687 -
Lal19g1031 538 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 524 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lal19g1031 538 PANTHER BNACNNG34340D PROTEIN 1 524 - -
Lal19g1031 538 MobiDBLite consensus disorder prediction 432 466 - -
Lal19g1031 538 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1031 Lal-Chr19 14134433 14137890 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1031 K14564 - gmx:100779446 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1031 19 14134433 14137890 Lal19g1031 19 14134433 14137890 ECH
Lal14g1469 14 15748200 15751210 Lal19g1031 19 14134433 14137890 LSH
Lal7g0885 7 15372756 15375849 Lal19g1031 19 14134433 14137890 LSH