Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0148 ATGGCTAGGCACAGAAACATCAAGAACAGCTTCATCACTGTAATCCCATCTCCACTCTTCACCCTATTTCGTGTCTCTCCACTTACTTCACTTCTCAACAAAACCCCAAGAAGCCACAGGTCGTGTTCTTCATTCCCACCAAGAAGCTCTTTTTTCATGATCTTCCTTCTCATTCTCGTCTCTTTCTTGGGACTTTCTCTGCTCAGGTTGGTGTTCGTTTCTCAGAACCTAGTGCCATGTCCATGTCCATTAACCTCTTTCCCCACTCTGTTGCCTCCTCCAAACTCTCATCTATCTTTGGCCTCACTTTCTACTAAGAATCAAGAGCCAGTAGTGCTGTCAAGGAGTGCAACAGTGCCCTTACCAGCTCATGCGGTTTCCAGGAACATGACAAAGGAGGAGGCAGAGTTCTGGGCACAGCCTGATGGAGAAGGGTACAGGCCTTGTTTGGATTTCAGTATACTGTACCGGAAAGCATCTGCTAAGATATCAAAGGAGAAGCACAGGTTCTTGGTGGTGGTAGTCTCAGGAGGATTGAATCAACAGAAGAATCAGATTGTTGATGCAGTCGTTATTGCGAGAATTCTTGAAGCAGCCCTGGTTGTGCCGGTTCTTGAGATTAATCAGATTTGGAAAGATGAAAGTGAATTTTCTGATATTTTCGATGTGGATCATTTCAAGAGGACCTTACAAGCTGATGTTCGAGTTGTATCATCTCTTCCCTCCACGCATTTGAGTTCAAAACCAACAATTAACACACGAATGCCCCTCAATGTTTCGCCCCTTTGGATCCGTACTAAATTCCTCACAGAACTGAACAAAGAAGGTGTTCTCATACTAAAAGGGATAGATTCTAAGCTCTCCAAGAATCTTCCACTTGATCTTCAGAAGCTTCGGTGTAAGGTAGCTTTCCATGCACTAAGATTTGCAGCTCCAATTCAGGAGCTTGGCGATAGGTTTGCAAGAAGAATGTGGATTGAGGGGCCATATATCGCTCTCCATCTCCGTCTCGAGAAGGATGTGTGGGTGAGAACTGGATGTCTTACTGGTTTAGGCCCCGAGTATGATGATATTATTAGGAAGATTCGTGAGTCTCGACCTAGACTCCTCACTGGAAGGTTGAACATGACCTACACTCAGCGAAGACTTGCTGGACTTTGTCCTCTAAATGCCTTAGAAGTAGCAAGGCTGCTTAAGGCTCTAGGGGCTCCGAGGACTGCACGAGTGTACAGGGCAGGAGGAGAGCCATTTGGGGGAGCCAAGGCGCTGCAGGCCCTTATGGGGGAGTTTCCAAATGTGGTAACAAAGGAAATGCTGGCACGAGAAGGCGAGCTCTCACCATACGTCAACAGACCATCTGCTATGGCTGCTCTGGACTACATTGTATCGCTGAGCAGTGACGTGTTCCTACCTTCCCATGGAGGCAACATGGGGCGAGCCATGCAGGGTCATCGCGCATACGTTGGGCATAGGAAATTTGTAAAGCCAGACAAGCGAGAAATGATTGCTTTCTTCGAAGACGCCTCCATTTCTGAGGCAGAGTTCAGAAGCATCATGAGGAAGCTGCACAGCAGATATCAGGGCCAGCCTGAGAAAAGGACAAACAAGAGAAGTACCCGGGATGTGATTGCTTACCCAGTGCCTGAATGCATGTGCAGACACAGCAACAGGCCTCTCCTAAGAAGCTAA 1689 0.4737 MARHRNIKNSFITVIPSPLFTLFRVSPLTSLLNKTPRSHRSCSSFPPRSSFFMIFLLILVSFLGLSLLRLVFVSQNLVPCPCPLTSFPTLLPPPNSHLSLASLSTKNQEPVVLSRSATVPLPAHAVSRNMTKEEAEFWAQPDGEGYRPCLDFSILYRKASAKISKEKHRFLVVVVSGGLNQQKNQIVDAVVIARILEAALVVPVLEINQIWKDESEFSDIFDVDHFKRTLQADVRVVSSLPSTHLSSKPTINTRMPLNVSPLWIRTKFLTELNKEGVLILKGIDSKLSKNLPLDLQKLRCKVAFHALRFAAPIQELGDRFARRMWIEGPYIALHLRLEKDVWVRTGCLTGLGPEYDDIIRKIRESRPRLLTGRLNMTYTQRRLAGLCPLNALEVARLLKALGAPRTARVYRAGGEPFGGAKALQALMGEFPNVVTKEMLAREGELSPYVNRPSAMAALDYIVSLSSDVFLPSHGGNMGRAMQGHRAYVGHRKFVKPDKREMIAFFEDASISEAEFRSIMRKLHSRYQGQPEKRTNKRSTRDVIAYPVPECMCRHSNRPLLRS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0148 562 PANTHER OS02G0726500 PROTEIN-RELATED 55 553 - -
Vvi17g0148 562 CDD O-FucT_plant 170 492 IPR024709 -
Vvi17g0148 562 Pfam GDP-fucose protein O-fucosyltransferase 170 487 IPR019378 -
Vvi17g0148 562 PIRSF UCP009360 25 556 IPR024709 -
Vvi17g0148 562 Coils Coil 560 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0148 Vvi-Chr17 1305277 1307598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0148 5 554 Miscellaneous Gene Families AT5G63390 61.221 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0148 - - vvi:100252457 1058.9