Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02505 ATGTCTCTCTTTCTTCTCCATGAAACCGCTGCTGGTTATGCTTTGTTAGAAGCTCATGGAATCGATGAAATTGGTCAGAACACCGAAGCTGTTCGAAACTCTGTTACAGATTTCAACAGGTTCGGTAAGGTTGTTAAGCTTCGCTCTTTCAACCCTTTTACCTCTGCTcttgaaggtcttgaacaaatcAATGCCGTTTCTGAAGGGATTATGACCGATGAGCTGAGGACTGTTTTGGAGACTAACTTACCTAAAGTAAAGGAAGGTAAGAAGCCAAAGTTCACCTTAGGTGTAGTAGAATCTAAGATTGGTTCACATATACACGAAGCTACTAAGATTCCAGTTCAAAGTAATGAGTTTGTTGGCGAACTTCTTCGTGGTGTCAGGCAACATTTTGACAAGTTCGTTGGTGATCTCAAGCCAGGAGATTTGGAAAAGGCACAACTTGGTCTGTGCCATAGTTACAGCAGAGCTAAGGTGAAATTTAATGTTAATCGGGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTTGATACACTTGATAAGGATATCAATTCATTCGCCATGAGAGTCAGAGAATGGTATTCATGGCATTTTCCTGAGCTAGTGAAGATTGTAAATGATAATTATCTGTATTGCAAAGTTGCAAAATTTATTGAGGATAAGTCAAAGTTGGCCGAAGACAAGATTGAAGCCTTAACTGACTTAGTTGGAGATGAGGATAAAGCAAAGGAGATTGTAGAAGCCGCCAAAGCCTCTATGGGCCAGGATTTGTCCCCTGTGGACTTGATCAATGTCCATCAGTTCGCCCAAAGGGTGATGGATCTATCTGATTACAGAAGAAGGTTGTCTGATTACCTCAGTGCTAAAATGAATGATATTGCACCAAATTTGCAATCTTTAGTTGGCGACAGTGTTGGTGCTCGTTTAATTTCCCATGCTGGTAGTCTCACTAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAGATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGGCTGATATTCCACTCTTCTTTTATTGGTCGTGCATCTGCCAAAAACAAGGGCCGGATGGCTCGCTACCTTGCAAACAAATGCTCAATTGCATCACGAATTGACTGCTTTTCTGAAAAGGGTACTTCAGCATTTGGTGAGAAACTCCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATTGATGTCATGAAATCTGCTATTGAAAGTGCTGATAACAATGATACAGAAATGGAAACAGAGGAACCTTCAGCTAAGAAAaccaagaagaagaagcaaaaaCCTGCTGCAGAAGATGATAAGGCCGAAGAAACTACAAATGGTGATGCGGAGCATAAgtcagaaaagaagaaaaagaagaaagaaaagagaaaattggAGCAGGAGGTGGAAGTTCAGGAACAGGTTGTAGATGATGGTGCCAATGGGGAATCAggcaagaagaagaaaaagaaatccaAAAGGAAGGATACCGAATGA 1560 0.3897 MSLFLLHETAAGYALLEAHGIDEIGQNTEAVRNSVTDFNRFGKVVKLRSFNPFTSALEGLEQINAVSEGIMTDELRTVLETNLPKVKEGKKPKFTLGVVESKIGSHIHEATKIPVQSNEFVGELLRGVRQHFDKFVGDLKPGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLAEDKIEALTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSDYRRRLSDYLSAKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTSAFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIESADNNDTEMETEEPSAKKTKKKKQKPAAEDDKAEETTNGDAEHKSEKKKKKKEKRKLEQEVEVQEQVVDDGANGESGKKKKKKSKRKDTE 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02505 519 Gene3D Nop domain 299 423 IPR042239 -
Tsu04g02505 519 PANTHER NOP56-LIKE PRE RNA PROCESSING RIBONUCLEOPROTEIN 1 518 - -
Tsu04g02505 519 MobiDBLite consensus disorder prediction 429 519 - -
Tsu04g02505 519 SMART NOSIC_2 170 222 IPR012976 -
Tsu04g02505 519 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Tsu04g02505 519 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Tsu04g02505 519 Coils Coil 469 496 - -
Tsu04g02505 519 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Tsu04g02505 519 MobiDBLite consensus disorder prediction 439 492 - -
Tsu04g02505 519 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 518 IPR045056 GO:0030515|GO:0031428|GO:0032040
Tsu04g02505 519 Coils Coil 217 237 - -
Tsu04g02505 519 Gene3D - 141 298 - -
Tsu04g02505 519 SUPERFAMILY Nop domain 163 412 IPR036070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02505 Tsu-Chr4 28313363 28316221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02505 K14564 - gmx:100815506 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02505 04 28313363 28316221 Tsu04g02505 04 28313363 28316221 ECH