Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1636 ATGGCTCTTTACCTTCTCTACGAATCCGCTTCTGGGTACGGCGTATTCCGTGCTCATGGCCTAGATGAGATTGGGCAGAACACTGAAGCGGTTCGGAACTCTGTTTCCGACTTGAACCGGTTCGGCAAGGTCGTCCAGCTTGCGGCATTTTCTCCTTTCCAATCTGCTCTTGATGCTCTTAAGCAATGCAACTCTGTTTCTGAAGGTCTGTTGACTGATGAGCTGAGAAGTTTTCTGGAGATTAATCTCCCAAAAGTTAAGGAAGGCAAGAAGGCAAAGTTCAGTTTAGGTGTAGTAGATCCTAAGATTGGTTCTCAGATCTCTGAAGTGACTAAAATTCCTTGTCAAAGTAATGAGTTTGTGTGTGAGCTGCTTCGAGGTGTTCGGCTTCATTTTGATAGATTTCTTAACGATCTCAAGCCTGGAGATTTGGAAAAGGCTCAACTTGGTCTGGGGCATAGTTACAGCAGGGCAAAAGTGAAATTTAATGTTAACCGAGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTTGATACACTTGATAAAGATATCAATTCTTTTTCCATGAGAGTCAGGGAATGGTACTCATGGCATTTTCCTGAACTGGTGAAGATTGTAAATGACAATTATCTATATGCCAGAGTTGCAAAATATATCGAAGATAAGTCAAAGCTGACTGAGGACAGAATCCCAGGCTTAACAGACGTTGTTGGAGATGAAGACAAGGCAAAGGAGATTGTAGAAGCTGCCAAGGCATCTATGGGACAGGATTTATCTCCAGTGGACCTAATTAATGTTCAGCAATTTGCTCAGAGGGTAATGGACCTATCTGAGTATAGGAGGAAACTTTATGATTATCTTGTTACCAAGATGAATGATATTGCACCAAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCTCGGTTGATTTCACATGCCGGAAGCCTCACTAATTTGGCCAAGTGCCCCTCTTCTACCCTTCAAATTCTTGGCGCAGAGAAGGCTTTGTTCAGGGCATTGAAAACCAGAGGCAATACTCCCAAATACGGTCTGATATTCCATTCATCTTTTATTGGCCGTGCATCTGCCAAAAACAAAGGCAGAATGGCTCGCTATCTTGCAAATAAGTGTTCAATTGCATCACGCATTGACTGCTTTTCTGAAAGGGGCAGTACAGCTTTTGGAGAGAAACTTCGTGAACAAGTTGAGGAGCGACTTGATTTTTATGACAAGGGAGTTGCCCCACGTAAGAACATTGATGTCATGAAGGCTGCTATGGAAAGTGCTGAAAATAAAGATACTGAGATTGCTACAGAAGCGCCTACTGAATTATCTGGCAAGAAAGGGAAAAAGAAGGCAAAATCTGCTGATGCAAATGGAGTTGAAGAAATGGCTGTTGATAAGTCCAACGGAGTTACAAATGGGGATGCATTAGAGGATCGCAAATCAGAAAAGAAAAAGAAGAAGAAAGAAAAGAGGAAATTGGACGTGGACACGGAGGTGCAGGACTTGACCGTTCAAGATGATGCTAATAATGGCGAGGCAAATGGAGAAGTGAAGAAGAAGAAGAAAGAGAAGAAAGATAAAGATGGAGAAGTACAAGACGGTGCTGTTAAGACCAAGAAGAAGAAGAAATCCAAAACTGAGGATGATGAGTAA 1665 0.4228 MALYLLYESASGYGVFRAHGLDEIGQNTEAVRNSVSDLNRFGKVVQLAAFSPFQSALDALKQCNSVSEGLLTDELRSFLEINLPKVKEGKKAKFSLGVVDPKIGSQISEVTKIPCQSNEFVCELLRGVRLHFDRFLNDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVAKYIEDKSKLTEDRIPGLTDVVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMDLSEYRRKLYDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERGSTAFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAMESAENKDTEIATEAPTELSGKKGKKKAKSADANGVEEMAVDKSNGVTNGDALEDRKSEKKKKKKEKRKLDVDTEVQDLTVQDDANNGEANGEVKKKKKEKKDKDGEVQDGAVKTKKKKKSKTEDDE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1636 554 SUPERFAMILY Nop domain 163 412 IPR036070 -
Lele24g1636 554 MobiDBLite consensus disorder prediction 476 503 - -
Lele24g1636 554 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Lele24g1636 554 Gene3D Nop domain 299 422 IPR042239 -
Lele24g1636 554 MobiDBLite consensus disorder prediction 446 460 - -
Lele24g1636 554 FunFam Nucleolar protein 56 299 411 - -
Lele24g1636 554 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Lele24g1636 554 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Lele24g1636 554 Gene3D - 141 298 - -
Lele24g1636 554 FunFam Nucleolar protein 56 140 298 - -
Lele24g1636 554 MobiDBLite consensus disorder prediction 516 554 - -
Lele24g1636 554 MobiDBLite consensus disorder prediction 429 554 - -
Lele24g1636 554 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 529 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lele24g1636 554 SMART NOSIC_2 170 222 IPR012976 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1636 Lele-ChrLele24 21923909 21927257 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1636 24 21923909 21927257 Lele24g1636 24 21923909 21927257 ECH
Lele22g1672 22 22213126 22216709 Lele24g1636 24 21923909 21927257 hybridization