Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01726 ATGGCACTGTTCATACTCTACGAATCGGCCTCTGGCTACGCCCTGTTCGAGGCTCATGGCCTCGACGAAATCGGGCAGAACACCGAAGCTGTTCGGAACTCTGTTTCGGATTTGAACAGGTTTGGCAAAGTTGTCAAGCTTCGCTCCTTCAATCCTTTTACCTCTGCTCTCGATGCCCTCAAACAGTGCAACGCCGTCTCCGAAGTCTTTATTTGTTGCTTATTGTTTTTTGTTATTGTTTTTTTTCTTGGCTGTTTAGGCATATTGACTGATGAGCTGAGGACAGTTTTGGAGACTAACTTGCCTAAAGTCAAGGAAGGTAAAAAATCGAAGTTCAGTTTAGGTGTGTCAGATTCTAAGATTGGTTCGCAGATATCTGAAGTGACAAAAATTCCTTGCCAAAGTAATGAGTTTGTGAATGAACTTCTTCGTGGTGTGCGGCTCCATTTTGATAAATTTGTCGGTGATCTCAAGTCAGGAGATTTGGAAAAGGCACAACTTGGTCTGGGTCATAGTTACAGCAGAGCAAAGGTGAAATTTAATGTTAATCGAGTTGACAATATGGTTATTCAAGCAATCTTCCTTCTTGACACACTTGATAAGGATATCAATTCATTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTCCCTGAACTGGTGAAGATTGTAAATGATAATTATCTGTATGCCAAAGCTGCAAAATTCATTGAGGATAAGTCAAAATTGTCTGAAGACAAGATTCCAGGCTTATGTGACATATTTGGGGATGAAGATAAAGCAAGGGAGATTTTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCCCAGTGGACCTGATCAATGTGCAGCAATTTGCACAGAGGGTAATGGACCTATCTGAGTACAGGAGGAGACTGTATGATTATTTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGCCTCACGAATTTAGCTAAATGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTTAGGGCATTGAAAACAAGAGGAAACACTCCCAAATATGGTCTTATATTCCACTCTTCTTTTATTGGTCGAACATCTTCCAAAAATAAGGGCCGAATGGCTCGCTATCTTGCTAACAAATGCTCAATAGCGTCACGGATTGACTGCTTTTCTGAAAAGGGTACTACTGCTTTTGGGGAGAAACTCCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGAAGTCTGCCATCGAAAGTGCTGATAACAAAGATACTGAGATGGAAACAGAAGCTGCGCCTGTTGAAGTTTCAGGCAAGAAGGCCAAGAAGAAGAAACAAAAAGCTGCTGCTGCAGATGAAGATGATGGCATGGTTATAGATAAGCCCACAGAAATTACAAATGGTGATGCATTGGAGGATCATAAATCAGAAAAGAAGAAGAAAAAGAAAGAAAAAAGAAAATTGGACCAGGATGTGGAGCTTCCTGATCAGGCTATAGATGATGGTGCCAATGGGGTTGCAAGTGAGCAGGAAGGAACAGTTAAAAAGAAAAAAAATAAAAAAGATGATAATGGGGAAGTACTGGAGGCTGCTGATGAGACTAAGAAGAAGAAAAAGAAATCAAAAAGGAAGGACACCGAGTAA 1731 0.4148 MALFILYESASGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEVFICCLLFFVIVFFLGCLGILTDELRTVLETNLPKVKEGKKSKFSLGVSDSKIGSQISEVTKIPCQSNEFVNELLRGVRLHFDKFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKAAKFIEDKSKLSEDKIPGLCDIFGDEDKAREILEAAKASMGQDLSPVDLINVQQFAQRVMDLSEYRRRLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRTSSKNKGRMARYLANKCSIASRIDCFSEKGTTAFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIESADNKDTEMETEAAPVEVSGKKAKKKKQKAAAADEDDGMVIDKPTEITNGDALEDHKSEKKKKKKEKRKLDQDVELPDQAIDDGANGVASEQEGTVKKKKNKKDDNGEVLEAADETKKKKKKSKRKDTE. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01726 576 MobiDBLite consensus disorder prediction 475 523 - -
Seca12g01726 576 Pfam snoRNA binding domain, fibrillarin 195 427 IPR002687 -
Seca12g01726 576 FunFam Nucleolar protein 56 317 429 - -
Seca12g01726 576 SUPERFAMILY Nop domain 181 430 IPR036070 -
Seca12g01726 576 MobiDBLite consensus disorder prediction 540 565 - -
Seca12g01726 576 MobiDBLite consensus disorder prediction 449 576 - -
Seca12g01726 576 Gene3D Nop domain 317 440 IPR042239 -
Seca12g01726 576 MobiDBLite consensus disorder prediction 449 468 - -
Seca12g01726 576 Gene3D - 158 316 - -
Seca12g01726 576 ProSiteProfiles Nop domain profile. 313 431 IPR002687 -
Seca12g01726 576 Pfam NOP5NT (NUC127) domain 4 68 IPR012974 -
Seca12g01726 576 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 87 570 IPR045056 GO:0030515|GO:0031428|GO:0032040
Seca12g01726 576 Coils Coil 500 520 - -
Seca12g01726 576 FunFam Nucleolar protein 56 158 316 - -
Seca12g01726 576 SMART NOSIC_2 188 240 IPR012976 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01726 Seca-Chr12 18979249 18982346 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01726 K14564 - gmx:100794470 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01726 12 18979249 18982346 Seca12g01726 12 18979249 18982346 ECH