Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0149 ATGCTGTCTTGCAGTAAACGTGATCACCGAGAAATTGGAGGTTGTGAGATCAGATTTCCCAAGAGATTTTATGTTTGGAACAGCTACCTCTGCTGTGCAGGTACATTCCTCATTCCAGCTCTCCTACATTTCCTCATTCTGAATCCTTTCCACGAGAAGCTCAGCAGATTCATGCTGAAGGAAGCTTCTTTCTTTACATTTACCCTGAAGGGCTGCAGAAACTCTTGGAATACATCAAGGACAGATACCAAAACCCGAAAATCTACATCACTGAAAATGGGATTAATGAGGCTATGTAAAGCCTTGGAAAATGGGGTGGATGTGAAGGGCTATTTCTACTGGTCTCTGTTCTACAGCTTTGAATTCGGATCAGGATACAACTTAAGATACGGATTTTACTACATAGATTACAAGGACAACCTAAAGGGCATCATCCCCAAAGAGTCTGCCAAGTGGGTATCTGATTTTCTCAAGAGGCAGTGA 483 0.4244 MLSCSKRDHREIGGCEIRFPKRFYVWNSYLCCAGTFLIPALLHFLILNPFHEKLSRFMLKEASFFTFTLKGCRNSWNTSRTDTKTRKSTSLKMGLMRLCKALENGVDVKGYFYWSLFYSFEFGSGYNLRYGFYYIDYKDNLKGIIPKESAKWVSDFLKRQ* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0149 160 PANTHER GLYCOSYL HYDROLASE 83 159 IPR001360 GO:0004553|GO:0005975
Vvi17g0149 160 SUPERFAMILY (Trans)glycosidases 95 159 IPR017853 -
Vvi17g0149 160 Gene3D Glycosidases 71 160 - -
Vvi17g0149 160 PRINTS Glycosyl hydrolase family 1 signature 129 141 IPR001360 GO:0004553|GO:0005975
Vvi17g0149 160 PRINTS Glycosyl hydrolase family 1 signature 105 122 IPR001360 GO:0004553|GO:0005975
Vvi17g0149 160 Pfam Glycosyl hydrolase family 1 91 159 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0149 Vvi-Chr17 1307825 1308955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0149 102 159 Glycoside Hydrolase AT2G44470 51.724 6.86e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0149 - K01188 qsu:112010098 90.8929