Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01736 ATGGCCTTGTTCTTGCTCTACGAATCCGCTTCCGGCTACGCCCTGTTGGAAGCTCATGGCCTCGACGAAATCGGCCAGAACACTGAAGCCGTTCGGAACTCCGTTTTGGACCTCAACAGGTTCGGCAAAGTCGTCAAGCTTCGTTCGTTCAATCCTTTCACTTCCGCTCTCGATGCTCTCAAGCAGTGCAATGCCGTCTCCGAAGGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGCAAGAAGTCCAAGTTCAGTTTAGGTGTGTCTGATCCTAAGATTGGTTCACAGATATCTGAGGTGACTAAGATTCCATGCCAAAGTAATGAGTTTGTGAGCGAACTTCTTCGTGGGGTGCGATTCCATTTTGACAAGTTTGTCAGTGATCTCAAGTCTGGAGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCTAAGGTGAAATTTAATGTTAATCGGGTTGACAACATGGTTATTCAAGCTATCTTCCTTCTGGATACACTTGATAAGGATGTCAATTCGTTCTCAATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTGCAAAATTTATTGAGGACAAGGCAAAGTTGACTGAAGACAAGATTCCAGACTTAACTGACATTGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAGGCCTCCATGGGGCAGGATTTGTCGCCAGTGGATTTGATCAATGTCCAGCAATTTGCCCAGAGGGTAATGGACCTATCTGAGTACAGGAAGAACCTATATGATTACCTGGTTGCTAAAATGAGTGATATTGCACCAAATTTAGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTCTGATTTCCCATGCTGGTAGCCTTACAAACTTAGCTAAGTGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAAGCTTTGTTCAGGGCACTAAAAACACGAGGAAACACCCCCAAATATGGTCTGATATTCCACTCTTCATTTATTGGTCGGGCATCTGCTAAAAATAAAGGCCGTATGGCTCGTTATCTTGCAAATAAATGTTCAATTGCATCACGGATTGACTGCTTTTCTGAAAGGGGTACTACTGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAAAGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGTCTGCTATTGAAAGTGTTGAAGACAAAGATACAGATATTGAAGCTTCAGGCAAGAAGGCCAAAAAGAAGAAACAAAAAGCTGCTGCTGCTGCTGAGGGTGATGACATGGCTGTAGATAAAGTTCCAAATGGTGATGCGGAGGATCTTAAATCagagaagaaaaagaaaaagaaagaaaagaGGAAATTGGAACAGGAGTTGGAGATTCAGGATCTGGCTGAAGATGATGGGGATGCCAATGAGCAAAATGGAACAGCTAAGAAGAAGAAGAATAAAAAGGATAATAACGGAGAAGTATTGGAGGCTGCTGACGAGTCTAAGAAGAAAAAGAAATCAAAAAAGAAGAATAATGAGTAA 1632 0.4216 MALFLLYESASGYALLEAHGLDEIGQNTEAVRNSVLDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDKFVSDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLTEDKIPDLTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMDLSEYRKNLYDYLVAKMSDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERGTTVFGEKLREQVEERLDFYDKGVAPRKNIDVMQSAIESVEDKDTDIEASGKKAKKKKQKAAAAAEGDDMAVDKVPNGDAEDLKSEKKKKKKEKRKLEQELEIQDLAEDDGDANEQNGTAKKKKNKKDNNGEVLEAADESKKKKKSKKKNNE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01736 543 PANTHER BNACNNG34340D PROTEIN 1 540 - -
Cca11g01736 543 MobiDBLite consensus disorder prediction 432 543 - -
Cca11g01736 543 Coils Coil 471 500 - -
Cca11g01736 543 MobiDBLite consensus disorder prediction 505 533 - -
Cca11g01736 543 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Cca11g01736 543 SUPERFAMILY Nop domain 163 412 IPR036070 -
Cca11g01736 543 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Cca11g01736 543 MobiDBLite consensus disorder prediction 463 493 - -
Cca11g01736 543 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 540 IPR045056 GO:0030515|GO:0031428|GO:0032040
Cca11g01736 543 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Cca11g01736 543 Gene3D Nop domain 299 423 IPR042239 -
Cca11g01736 543 SMART NOSIC_2 170 222 IPR012976 -
Cca11g01736 543 Gene3D - 140 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01736 Cca-Chr11 41941629 41944976 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01736 K14564 - gmx:100794470 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01736 11 41941629 41944976 Cca11g01736 11 41941629 41944976 ECH