Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03037 ATGGCTCTCTTTCTTCTCTATGAATCCGCTGCTGGTTACGCTTTGTTTGAAGCTCATGGAATCGATGAAATTGGTCAGAATACCGAAGCTGTTCGGAACTCTGTTACCGATATGAACAGGTTCGGTAAGGTTGTTAAGTTTCGCTCTTTCAACCCTTTTACCTCTGCTCTTGAAGGTCTTGAACAAATCAACGCCGTTTCTGAAGGGATTATGACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTACCTAAAGTAAAGGAAGGGAAGAAGCCAAAGTTCACCTTAGGTGTAGTAGATTCTAAGATTGGTTCACATATACATGAAGCTACTAAGATTCCAGTCCAAAGTAATGAGTTTGTTGGTGAACTTCTCCGTGGTGTCAGGCAACATTTTGACAAGTTTGTTGGTGATCTCAAGCCTGGAGATTTGGAAAAGGCACAACTTGGTCTGTGCCACAGTTACAGCAGAGCTAAGGTGAAATTCAATGTTAATCGGGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTCGACACCCTTGATAAGGATATCAATTCATTCGCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAACTAGTGAAGATTGTAAATGATAATTATCTGTATTGCAAAATTGCAAAATTTATTGAGGATAAGTCAAAGTTGGCCGAAGACAAGATTGAAGCCTTAACCGACTTAGTTGGAGATGAAGATAAAGCAAAAGAGATTGTAGAAGCCGCCAAAGCCTCCATGGGCCAGGATTTGTCCCCTGTGGACTTGATCAATGTCCATCAATTTGCCCAAAGGGTGATGGACCTATCTGATTACAGAAGAAGGTTGTCTGATTACCTCAGTGCTAAAATGAATGATATTGCACCAAATTTGCAATCTTTAGTTGGTGACAGTGTTGGTGCTCGTTTAATTTCCCATGCTGGTAGTCTCACTAATTTAGCCAAGTGCCCATCTTCAACTCTTCAGATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACCCCCAAATATGGTCTGATATTCCACTCTTCTTTTATTGGTCGTGCATCTGCCAAAAACAAGGGCCGAATGGCTCGCTATCTTGCAAACAAATGCTCAATTGCATCACGAATTGACTGCTTTTCTGAGAAAGGTACTTCAGCATTTGGAGAGAAACTCCGTGAGCAAGTTGAGGAGCGACTGGACTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATTGATGTTATGAAATCTGCTATTGAAAGTGCTGATAACAAAGATACAGAAATGGAAACAGAGGAAGCTTCAGCTAAGAAAACCAAGAAGAAGAAGCAAAAAGCTGCTGAAGAAGATGACATGGCTGCAGATAAGGCTGCAGAAACTACAAATGGTGATGCGGAGCATAAGTCAGAAAAGAAGAAAAAGAAGAAAGAAAAGAGAAAATTGGACCAGGAGGTGGAAGTTCAGGAACAGGTTGCAGATGATGGTGCCAATGGGGAATCAGGCAAGAAGAAGAAAAAGAAATCCAAAAGAAAGGATACCGAATGA 1572 0.4141 MALFLLYESAAGYALFEAHGIDEIGQNTEAVRNSVTDMNRFGKVVKFRSFNPFTSALEGLEQINAVSEGIMTDELRTVLETNLPKVKEGKKPKFTLGVVDSKIGSHIHEATKIPVQSNEFVGELLRGVRQHFDKFVGDLKPGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYCKIAKFIEDKSKLAEDKIEALTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSDYRRRLSDYLSAKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTSAFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIESADNKDTEMETEEASAKKTKKKKQKAAEEDDMAADKAAETTNGDAEHKSEKKKKKKEKRKLDQEVEVQEQVADDGANGESGKKKKKKSKRKDTE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03037 523 SUPERFAMILY Nop domain 163 412 IPR036070 -
Trre15g03037 523 Gene3D - 141 298 - -
Trre15g03037 523 FunFam Nucleolar protein 56 140 298 - -
Trre15g03037 523 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Trre15g03037 523 Gene3D Nop domain 299 425 IPR042239 -
Trre15g03037 523 Coils Coil 438 458 - -
Trre15g03037 523 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Trre15g03037 523 Coils Coil 473 500 - -
Trre15g03037 523 MobiDBLite consensus disorder prediction 431 523 - -
Trre15g03037 523 MobiDBLite consensus disorder prediction 431 496 - -
Trre15g03037 523 SMART NOSIC_2 170 222 IPR012976 -
Trre15g03037 523 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Trre15g03037 523 FunFam Nucleolar protein 56 299 411 - -
Trre15g03037 523 Coils Coil 217 237 - -
Trre15g03037 523 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 517 IPR045056 GO:0030515|GO:0031428|GO:0032040
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03037 Trre-Chr15 27418371 27421017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03037 K14564 - gmx:100815506 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03037 15 27418371 27421017 Trre15g03037 15 27418371 27421017 ECH