Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2389 ATGGCGGCACTGTTCCTGCTCTACGAATCCGCCTGTGGCTACGCTCTCTTCGAGGCTCATGGCCTCGACGAAATCGGTCAGAACACCGAAGCAGTTCGGAACTCCGTTTCCGATTTGAACCGGTTCGGCAAGGTCGTCAAGCTCTGCTCCTTCCATGCTTTTACCTCTGCCCTTGATGCCCTCAAACAGTGCAACGCTGTCTCTGAAGGGATATTGACTGATGAGTTGAGGGCTGCTTTGGAGAAAAACTTGCCTAAAGTTAAGGAAGGTAAGAAACCCAAGTTCAGTTTAGGTGTGTCTGATCCTAAGATTGGTTCTCAGATAGCTGAAGTCAGTAAAATTCCTTGCCAAAGTAATGAGTTTGTCAGCGAGCTTCTTCGCGGCGTGCGCCTCCATTTTAATAAGTTCATTGGTGATCTCAAGACAGGAGATTTGGAAAAAGCCCAACTTGGTTTGGGGCATAGCTACAGCAGAGCCAAGGTGAAGTTTAATGTTAATCGCGTTGACAACATGGTCATCCAAGCAATCTTCCTTCTTGATACACTTGATAAGGATGTCAATTCATTTTCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAGCTGGTGAAGATTGTTAATGACAATTATCTGTATGCCAAAGTTGCCAAGTTTATTAAGGATAAGTCGAAGTTGACTGAAGACAATATTTCAGACTTAACTGATATTGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCGAAGTGGACTTGATCAATGTCCACCAGTTTGCACAGAGGGTCATGGACCTATCAGAGTACAGGAGGAAGCTGTACGATTACCTGGTTGCTAAAATGAGCGATATTGCACCCAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGCGCTCGTTTGATCTCCCATGCTGGCAGTCTCACAAATTTAGCAAAGTGCCCCTCTTCAACTCTTCAAATTCTCGGTGCAGAGAAGGCTTTGTTCAGGGCCTTGAAAACAAAAGGGAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATCGGAAAAGCATCAGCCAAAAACAAGGGCCGAATGGCTCGGTATCTTGCAAACAAGTGCTCAATTGCATCCCGCATTGACTGCTTTTCTGAGAGCAGCTCTACTGCTTTTGGGCTGAAACTTCGTGAGCAAGTTGAGGAGCGACTTGACTTTTACGACAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGAAGTCCGCTATTGAAAGTGCTGCGAACAATGATGCAGAGATGGAAACAGAAGAAGTGCCTGTCGAAGCTTCTAGCAAGAAATCCAAGAAGAAGCAAAAAGCTGCTGATGAAGGTGATGAGATGGCTGTTGATAAGCCAACAGTTACAAATGGTGATGCAGTGGAGGACCATAAATCAGAAAAGAAGAAAAAGAAAGAAAAGAGAAAATTGGACCAGGAGGTGGCTGCTGAAAATGGTACAAATGGGAATGCAAGTGAGCAAAGATCTGTTAAAAAGAAGAAGGATAGAAAGGATGATAATGGAGAAGCAGTGGAGGCTGCTAGTGAGTCTAAGAAGAAAAAGAAATCAAAAAAGAATGCCGAGTAA 1641 0.4418 MAALFLLYESACGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLCSFHAFTSALDALKQCNAVSEGILTDELRAALEKNLPKVKEGKKPKFSLGVSDPKIGSQIAEVSKIPCQSNEFVSELLRGVRLHFNKFIGDLKTGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIKDKSKLTEDNISDLTDIVGDEDKAKEIVEAAKASMGQDLSEVDLINVHQFAQRVMDLSEYRRKLYDYLVAKMSDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGKASAKNKGRMARYLANKCSIASRIDCFSESSSTAFGLKLREQVEERLDFYDKGVAPRKNIDVMKSAIESAANNDAEMETEEVPVEASSKKSKKKQKAADEGDEMAVDKPTVTNGDAVEDHKSEKKKKKEKRKLDQEVAAENGTNGNASEQRSVKKKKDRKDDNGEAVEAASESKKKKKSKKNAE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2389 546 SMART NOSIC_2 171 223 IPR012976 -
Lja4g2389 546 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Lja4g2389 546 MobiDBLite consensus disorder prediction 475 499 - -
Lja4g2389 546 Gene3D Nop domain 300 412 IPR042239 -
Lja4g2389 546 PANTHER BNACNNG34340D PROTEIN 4 523 - -
Lja4g2389 546 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 4 523 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lja4g2389 546 Gene3D - 141 299 - -
Lja4g2389 546 SUPERFAMILY Nop domain 164 413 IPR036070 -
Lja4g2389 546 MobiDBLite consensus disorder prediction 444 468 - -
Lja4g2389 546 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Lja4g2389 546 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Lja4g2389 546 MobiDBLite consensus disorder prediction 433 546 - -
Lja4g2389 546 MobiDBLite consensus disorder prediction 512 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2389 Lja-Chr4 26764921 26767748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2389 K14564 - gmx:100815506 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2389 4 26764921 26767748 Lja4g2389 4 26764921 26767748 ECH