Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2390 ATGGCACAGTTGAAAGCACTCCCTGCATATCCATCCTCTGCTACTCCTCCTTCCCTGCATGCAACAGATCACCTTCTGCATCATCAGTTCTGGAAGGCAAAGCCATCATCATTCAAACAGTTGGGACCAAGAGCTTGTGTTGGTGCTGGTAAACTTCAAGCTATAAAAGCAGTTCTGCGCAATGATACAGATGTAGAAATTTCTGAAACCAAGAAGGGTAGTGGGCTACGAGGCAAATTGAATAAGGTTGTTCTTGCTTACAGTGGTGGCTTAGACACATCGGTCATTGTGCCATGGCTGAGAGAGAATTACGGTTGTGAAGTCGTTTGCTTCACTGCTGATGTTGGCCAAGGACTAAAAGAGTTGGAAGGTTTAGAAGAGAAAGCCAAAGCCAGTGGAGCCTCTCAATTAGTGGTTAAGGACTTGCAAGAGGAATTTGTTAAAGATTACATATTCCCTTGCCTGCGTGCTGGTGCCACTTATGAGAGGAAGTATTTGCTTGGGACTGCGATGGCTCGCCCTGTAATTGCTAAGGCCATGGTTGATGTTGCTAAAGAAGTCGGAGCTGACGCTGTCTCCCATGGGTGCACCGGGAAAGGAAATGATCAGGTTCGATTTGAGCTGACGTTCTTTGCTCTAAACCCCAAGCTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTATGCTAAAAAGCATAATATTCCTGTCCCAGTGACAAAGAAATCCATATATAGCAGGGATAGAAACCTGTGGCACCTTAGCCATGAGGGTGATAAGTTGGAAGACCCAGCTAATGAGCCCCAAAAGGATATGTACATGATGTCTGTAGATCCTGAGGATGCTCCAGACAAGCCAGAATATGTGGAAATTGGGATAGAGGCAGGGCTTCCTGTTTCAGTCAACGGGAAGAGGCTTTCGCCAGCGTCGTTACTAGCAGAGCTCAATGAGATTGGCGGAAGGCATGGAATTGGCCGGGTTGACATGGTTGAGAATCGGCTCGTAGGTATGAAGAGCCGTGGAGTTTACGAAACTCCTGGCGGAACCATCCTGTTCGCTGCAGCAAGGGAGCTAGAGCTTCTGACGCTTGACCAAAAAGCAATACAAGTTAAAGATTCTCTAGCCCTTACGTATGCAGAGTTAGTGTATGCTGGCAGATGGTTTGATCCGCTTCGCGAGTCCTTGGATGCGTTTATGCAGGAGATCACAGCGACCACAACAGGTTCTGTGACTTTGAAACTGTACAAAGGTTCTGTTGGTGTAACCAGTAGGCAGAGCCCCTTTAGCCTGTACAGGGAAGACATTTCATCATTCGAGAACGGGGAGATATATGATCAAGCTGATGCTGCGGGCTTTATTCGGCTTTATGGTCTTCCCATGAGGGTTCGAGCAATGCTTAAGCAGGGTATCTAA 1437 0.4718 MAQLKALPAYPSSATPPSLHATDHLLHHQFWKAKPSSFKQLGPRACVGAGKLQAIKAVLRNDTDVEISETKKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGLKELEGLEEKAKASGASQLVVKDLQEEFVKDYIFPCLRAGATYERKYLLGTAMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNIPVPVTKKSIYSRDRNLWHLSHEGDKLEDPANEPQKDMYMMSVDPEDAPDKPEYVEIGIEAGLPVSVNGKRLSPASLLAELNEIGGRHGIGRVDMVENRLVGMKSRGVYETPGGTILFAAARELELLTLDQKAIQVKDSLALTYAELVYAGRWFDPLRESLDAFMQEITATTTGSVTLKLYKGSVGVTSRQSPFSLYREDISSFENGEIYDQADAAGFIRLYGLPMRVRAMLKQGI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2390 478 Hamap Argininosuccinate synthase [argG]. 80 476 IPR023434 GO:0004055
Lja4g2390 478 Gene3D Single helix bin 452 477 - -
Lja4g2390 478 PANTHER ARGININOSUCCINATE SYNTHASE 79 476 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lja4g2390 478 Gene3D Argininosuccinate synthetase, chain A, domain 2 142 432 IPR024074 GO:0004055
Lja4g2390 478 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 250 476 IPR024074 GO:0004055
Lja4g2390 478 ProSitePatterns Argininosuccinate synthase signature 1. 86 94 IPR018223 GO:0004055|GO:0005524|GO:0006526
Lja4g2390 478 TIGRFAM argG: argininosuccinate synthase 82 473 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lja4g2390 478 CDD Argininosuccinate_Synthase 83 467 IPR023434 GO:0004055
Lja4g2390 478 Gene3D HUPs 82 251 IPR014729 -
Lja4g2390 478 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 81 250 - -
Lja4g2390 478 ProSitePatterns Argininosuccinate synthase signature 2. 195 206 IPR018223 GO:0004055|GO:0005524|GO:0006526
Lja4g2390 478 Pfam Arginosuccinate synthase 84 470 IPR001518 GO:0004055|GO:0005524|GO:0006526
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2390 Lja-Chr4 26782537 26787040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2390 K01940 - gmx:100816038 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2390 4 26782537 26787040 Lja4g2390 4 26782537 26787040 ECH