LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5243	ATGGCTCCTCTGAATGCAGCTCTCACATATTCATCCCCAGCTATTGCTCCTGCTCGACATGCAAGAGAGCAACTATTTCAGCACCAGTTCTGCAAAACAAATTCTTTGTCATCCAATGAGTTGGGGCCAAGAACAAGTGTTGTTGGTGCCAGGAAAACTCAAGTTATAAAAGCAGTGCTGCAAGATATACAAATTCCTGAAACCAAGAATGTTACCGGCTTACGCGGGAAATTGAATAAGGTTGTGCTGGCTTACAGTGGTGGCTTAGACACATCAGTGGTTGTCCCCTGGCTGAGAGAGAACTACGGTTGTGATGTTGTTTGCTTCACTGCTGATCTTGGACAAGGTGCACAAGAATTGGAAGGTTTAGAAGAGAAGGCCAAAGCTAGTGGAGCCTCCCACTTAGTTGTGAAGGATTTGAAGGAGGAATTTGTTAGAGACTATGTATTCCCTTGCCTGCGTGCTGGTGCACTTTATGAGAGGAAATACTTGCTTGGAACGGCAATAGCCCGCCCTGTGATTGCAAAGGCCATGGTGGATATTGCCAAAGAAGTTGGAGCTGATGCTGTTTCCCATGGTTGCATAGGGAAAGGAAATGATCAGGTTCGGTTTGAGCTCTCTTTCTTTGCTCTGAATCCCAAGTTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATAGAGTATGCTAAGAAGCATAATGTACCTGTTCCTCTTACCAAGAAATCCATATACAGCAGGGACAAGAACCTTTGGCACATAACCCATGAGGGCGATGTTTTAGAAGACCCAGCAAATGAACCAAAAAAGGATATGTACATGATAACTGTAGACCCAGAGGATGCTCCCAATGAACCAGAATACGTGGAAATCGGGATAGAGAATGGTGTTCCTGTATCGGTGAACGGGAAGAAGCTTTCACCAGGAAACTTGGTTGCCAAGCTGAATGAGATCGCCGGAAGGCACGGAATCGGCCGAGTCGACCTTGTTGAAGACAGGATTGTAGGCATGAAGAGCCGTGGAGTTTATGAAACCCCTGGTGGCACCATCCTCTTCGATGCAGTGAGGGACTTGGAGTGCTTAACACTTGACAGAGAAACACTTCAGCTGAAAGACACATTGGCCCTCAAATATGCAGAGTTAGTGTATGCTGGGAGGTGGTTCGATCCGCTCCGCGAGTCCTTGGACGCCTTCATGCAGAAGATCACCGAAACCACAACAGGCTCAGTGACTTTGAAGCTGTACAAAGGTTCTGCTGCTGTGACTGGTAGGAAGAGCCCTTACAGTCTTTACAGAGAAGACATTTCTTCATTTGATACTGGGGATTTATACAATCATGCTGACGCTGTTGGCTTTATCAAGCTTTATGGTCTTCCAATGAGGATTAGAGCAATGATGCAACAAGGCCTCTAG	1431	0.4633	MAPLNAALTYSSPAIAPARHAREQLFQHQFCKTNSLSSNELGPRTSVVGARKTQVIKAVLQDIQIPETKNVTGLRGKLNKVVLAYSGGLDTSVVVPWLRENYGCDVVCFTADLGQGAQELEGLEEKAKASGASHLVVKDLKEEFVRDYVFPCLRAGALYERKYLLGTAIARPVIAKAMVDIAKEVGADAVSHGCIGKGNDQVRFELSFFALNPKLNVVAPWREWDITGREDAIEYAKKHNVPVPLTKKSIYSRDKNLWHITHEGDVLEDPANEPKKDMYMITVDPEDAPNEPEYVEIGIENGVPVSVNGKKLSPGNLVAKLNEIAGRHGIGRVDLVEDRIVGMKSRGVYETPGGTILFDAVRDLECLTLDRETLQLKDTLALKYAELVYAGRWFDPLRESLDAFMQKITETTTGSVTLKLYKGSAAVTGRKSPYSLYREDISSFDTGDLYNHADAVGFIKLYGLPMRIRAMMQQGL*	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5243	476	Hamap	Argininosuccinate synthase [argG].	78	474	IPR023434	GO:0004055
	Lja1g5243	476	Gene3D	Argininosuccinate synthetase, chain A, domain 2	140	430	IPR024074	GO:0004055
	Lja1g5243	476	Gene3D	Single helix bin	440	475	-	-
	Lja1g5243	476	ProSitePatterns	Argininosuccinate synthase signature 1.	84	92	IPR018223	GO:0004055\|GO:0005524\|GO:0006526
	Lja1g5243	476	SUPERFAMILY	Argininosuccinate synthetase, C-terminal domain	248	474	IPR024074	GO:0004055
	Lja1g5243	476	CDD	Argininosuccinate_Synthase	81	465	IPR023434	GO:0004055
	Lja1g5243	476	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	79	243	-	-
	Lja1g5243	476	Pfam	Arginosuccinate synthase	82	468	IPR001518	GO:0004055\|GO:0005524\|GO:0006526
	Lja1g5243	476	TIGRFAM	argG: argininosuccinate synthase	80	470	IPR001518	GO:0004055\|GO:0005524\|GO:0006526
	Lja1g5243	476	PANTHER	ARGININOSUCCINATE SYNTHASE	77	475	IPR001518	GO:0004055\|GO:0005524\|GO:0006526
	Lja1g5243	476	Gene3D	HUPs	80	249	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5243	Lja-Chr1	78720081	78724360	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5243	K01940		-	gmx:100816038	746.503

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5243	1	78720081	78724360	Lja1g5243	1	78720081	78724360	ECH