Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04448 ATGGCACTGTTTCTTCTATACGAATCCGCTTCGGGCTACGCACTGTTTGAGGCTCATGGCCTCGACGAAATTGGTCAGAACACCGAGGCAGTTAGGAACTCCGTTTCCGACCTCAACAGGTTTGGGAAAGTAGTTAAGCTTCGTTCCTTCAACCCTTTCACTTCCGCTCTTGATGCCCTCAAGCAGTGCAACGCAGTCTCCGAAGGCATATTAACTGATGAGTTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTAAAAGAAGGTAAAAAGGGCAAGTTCAGTGTTGGTGTGTCCGATCCTAAGATTGGTTCTCAAATATCTGAAGTGACTAAGATTCCTTGCCAGAGTAATGAGTTTGTGAGTGAACTTCTTCGCGGCGTGCGACTCCATTTTGATACCTTTGTGGGTGATCTCAAGTCCGGAGATTTGGAAAAGGCTCAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAATTTAATGTCAATCGAGTGGACAACATGGTTATTCAAGCTATCTTCCTCCTAGATACACTTGACAAGGATATCAATTCGTTTTCTATGAGAGTTAGAGAGTGGTATTCATGGCATTTCCCTGAGCTGGTGAAAATAGTAAATGATAATTATCTGTATGCCAAAGTTTCAAAATATATTGAGGATAAGGCCAAGTTGACTGAAGAGAAGATTCCAGGCTTAACTGACATAGTTGGGGATGAAGATAAAGCAAAGGAAATTGTGGAAGCTGCCAAGGCCTCCATGGGACAGGATTTGTCACCAGTTGATTTGATCAATGTCCAACAATTTGCACAAAGGGTGATGGATCTGTCTGAGTACAGGAAGAACCTGTATGATTACCTGGTTGCAAAAATGAATGATATTGCACCAAATTTGGCCTCTCTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGTCTCACAAATTTAGCTAAGTGCCCCTCGTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCATTCTTCTTTTATTGGTCGGGCATCTGCCAAAAACAAGGGCAGAATGGCTCGTTACCTTGCAAATAAATGCTCAATTGCGTCAAGGATTGACTGCTTTTCTGAAAGGGGTACTACTGTTTTTGGGGAAAAACTGCGTGAGCAAGTTGAGGAACGACTCGACTTTTATGACAAGGGAGTTGCACCTCGCAAGAACATAGATGTCATGCAATCTGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAGTGCCTGCTGAAGTTTCAGGCAAGAAAGCCAAAAAGAAAAAACAAAAAGCTGCTGCCGAAGAAGGCGATGACATGGCTGTAGATAAGCCTACAAAAGTTACTAATGGTGATGCTGTGGAGGATCACAAATCAGAGAAGAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGGACAGGAATTGGAACATGACGATCAGGATGATGGTGCCAATGGGGTCGTGAGTGAGCAGGATGGAACAGCTAAAAAGAAGAATAAAAAGGATAATAATGAAGTAGTGGAGGCTGGTGAAGAGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGATAACGAGTAA 1659 0.4219 MALFLLYESASGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKGKFSVGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRLHFDTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVSKYIEDKAKLTEEKIPGLTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERGTTVFGEKLREQVEERLDFYDKGVAPRKNIDVMQSAIESAENKDTEMETEVPAEVSGKKAKKKKQKAAAEEGDDMAVDKPTKVTNGDAVEDHKSEKKKKKKEKRKLGQELEHDDQDDGANGVVSEQDGTAKKKNKKDNNEVVEAGEESKKKKKKSKKKDNE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04448 552 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Spst3g04448 552 Gene3D Nop domain 299 423 IPR042239 -
Spst3g04448 552 SUPERFAMILY Nop domain 163 412 IPR036070 -
Spst3g04448 552 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Spst3g04448 552 MobiDBLite consensus disorder prediction 519 541 - -
Spst3g04448 552 MobiDBLite consensus disorder prediction 432 487 - -
Spst3g04448 552 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Spst3g04448 552 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 546 IPR045056 GO:0030515|GO:0031428|GO:0032040
Spst3g04448 552 Coils Coil 421 441 - -
Spst3g04448 552 FunFam Nucleolar protein 56 140 298 - -
Spst3g04448 552 MobiDBLite consensus disorder prediction 430 552 - -
Spst3g04448 552 Coils Coil 480 500 - -
Spst3g04448 552 SMART NOSIC_2 170 222 IPR012976 -
Spst3g04448 552 Gene3D - 140 298 - -
Spst3g04448 552 MobiDBLite consensus disorder prediction 495 510 - -
Spst3g04448 552 FunFam Nucleolar protein 56 299 411 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04448 K14564 - gmx:100794470 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04448 3 96010496 96013813 Spst3g04448 3 96010496 96013813 ECH