Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01192 ATGGCGCTGTTCCTTCTCTACGAATCCGCTTCGGGCTACACCCTGTTCGAGGTTCACGGCCTCGACGAAATCGGCCAGAACACCGAAGCGGTTCGGAACTCCGTTTCGGACCTCAACAGGTTCGGCAAAGTCGTTAAGCTTCGCTCCTTCAACCCTTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAAGATTGGTTCGCAGATATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAGTTTAATGTTAACCGTGTTGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATGTTAATTCGTTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCACTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTGCAAAATTTATTGAGGATAAGGCAAAGTTGGCTGAAGACAAGATTCCAGCCTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCCCAGTGGACTTGATCAACGTCCATCAATTTGCACAGAGGGTAATGGACCTATCTGAGTACAGAAAAAACTTGTATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGCCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAACGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGGCTGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAGCACCTGCTGAAGTTTCAGGCAAGAAAACCAAAAAGAAGAAACAAAAAGCTGCTGATGCTGAAGATGACGTGGCTATAGATACAAATGGTGATGCTGTGGAGGATCATAAATCAGAGAGGAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGAACAGGAGATGGAGGTTGACGATCAGGCTGAAGATGATGGTGCCAATGGAGTCACAAGTGAGCAAGAAGGAACAGCTAAAAAGAAGAATAAAAAGGATAGTAATGGAGAAGCATTCGAGGCTGGTGAAGTGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGACATCGAGTAA 1650 0.4291 MALFLLYESASGYTLFEVHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLAEDKIPALTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTTVFGQKLREQVEERLDFYDKGVAPRKNIDVMQAAIESAENKDTEMETEAPAEVSGKKTKKKKQKAADAEDDVAIDTNGDAVEDHKSERKKKKKEKRKLEQEMEVDDQAEDDGANGVTSEQEGTAKKKNKKDSNGEAFEAGEVSKKKKKKSKKKDIE 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01192 549 MobiDBLite consensus disorder prediction 432 496 - -
Gma17g01192 549 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 531 IPR045056 GO:0030515|GO:0031428|GO:0032040
Gma17g01192 549 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Gma17g01192 549 MobiDBLite consensus disorder prediction 515 537 - -
Gma17g01192 549 Gene3D Nop domain 299 422 IPR042239 -
Gma17g01192 549 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Gma17g01192 549 Coils Coil 421 441 - -
Gma17g01192 549 PANTHER BNACNNG34340D PROTEIN 1 531 - -
Gma17g01192 549 Coils Coil 474 504 - -
Gma17g01192 549 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Gma17g01192 549 SUPERFAMILY Nop domain 163 412 IPR036070 -
Gma17g01192 549 SMART NOSIC_2 170 222 IPR012976 -
Gma17g01192 549 MobiDBLite consensus disorder prediction 430 549 - -
Gma17g01192 549 Gene3D - 140 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01192 Gma-Chr17 10464388 10467801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01192 K14564 - gmx:100815506 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01192 17 10464388 10467801 Gma17g01192 17 10464388 10467801 ECH
Gma17g01192 17 10464388 10467801 Gma05g00436 05 4154670 4158035 GST